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a |
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b/NAMESPACE |
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# Generated by roxygen2: do not edit by hand |
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S3method(plot,bioTMLE) |
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export(.biotmle) |
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export(biomarkertmle) |
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export(eif) |
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export(heatmap_ic) |
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export(modtest_ic) |
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export(rnaseq_ic) |
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export(toptable) |
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export(volcano_ic) |
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exportClasses(bioTMLE) |
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exportClasses(data.frame_OR_EList) |
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import(BiocGenerics) |
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importClassesFrom(S4Vectors,Annotated) |
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importClassesFrom(S4Vectors,Vector) |
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importClassesFrom(SummarizedExperiment,SummarizedExperiment) |
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importClassesFrom(limma,EList) |
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importClassesFrom(methods,data.frame) |
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importFrom(BiocParallel,MulticoreParam) |
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importFrom(BiocParallel,bplapply) |
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importFrom(BiocParallel,bpprogressbar) |
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importFrom(BiocParallel,register) |
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importFrom(SummarizedExperiment,SummarizedExperiment) |
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importFrom(SummarizedExperiment,assay) |
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importFrom(SummarizedExperiment,colData) |
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importFrom(SummarizedExperiment,rowData) |
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importFrom(assertthat,assert_that) |
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importFrom(dplyr,"%>%") |
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importFrom(dplyr,arrange) |
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importFrom(dplyr,filter) |
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importFrom(dplyr,mutate) |
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importFrom(dplyr,select) |
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importFrom(dplyr,slice) |
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importFrom(drtmle,drtmle) |
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importFrom(ggplot2,aes) |
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importFrom(ggplot2,geom_histogram) |
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importFrom(ggplot2,geom_point) |
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importFrom(ggplot2,ggplot) |
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importFrom(ggplot2,ggtitle) |
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importFrom(ggplot2,guide_legend) |
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importFrom(ggplot2,guides) |
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importFrom(ggplot2,theme_bw) |
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importFrom(ggplot2,xlab) |
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importFrom(ggplot2,ylab) |
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importFrom(ggsci,scale_fill_gsea) |
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importFrom(limma,eBayes) |
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importFrom(limma,lmFit) |
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importFrom(limma,topTable) |
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importFrom(limma,voom) |
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importFrom(limma,voomWithQualityWeights) |
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importFrom(methods,is) |
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importFrom(methods,new) |
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importFrom(methods,setClass) |
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importFrom(methods,setClassUnion) |
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importFrom(stats,p.adjust) |
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importFrom(stats,plogis) |
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importFrom(stats,quantile) |
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importFrom(superheat,superheat) |
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importFrom(tibble,as_tibble) |
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importFrom(tibble,rownames_to_column) |