SummarizedExperiment, S4Vectors, Biobase, parallel,
BiocParallel, RColorBrewer, caTools, magicaxis, methods,
reshape2, scales, grDevices, graphics, stats, utils,
assertthat, matrixStats, downloader

Software, Pharmacogenetics, QualityControl, Survival,
Pharmacogenomics, Classification

Venkata Manem [aut],
  Petr Smirnov [aut],
  Ian Smith [aut],
  Meghan Lambie [aut],
  Christopher Eeles [aut],
  Scott Bratman [aut],
  Benjamin Haibe-Kains [aut, cre]

A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R
    using Literate Programming techniques.

evaluate (>= 0.10), highr, markdown, stringr (>= 0.6), yaml
(>= 2.1.19), methods, xfun (>= 0.15), tools

formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), magick,
png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1),
showtext, tibble, sass, ragg, styler (>= 1.2.0)

Package vignettes based on R Markdown v2 or
reStructuredText require Pandoc (http://pandoc.org). The
function rst2pdf() require rst2pdf
(https://github.com/rst2pdf/rst2pdf).

'block.R' 'cache.R' 'utils.R' 'citation.R' 'hooks-html.R'
'plot.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R'
'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R'
'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R'
'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R'
'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R'
'template.R' 'utils-conversion.R' 'utils-rd2html.R'
'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'

Classes and Functions to Serve as the Basis for Other 'Gx'
Packages

c(
    person("Petr","Smirnov", email = "petr.smirnov@uhnresearch.ca", role = c("aut")),
    person("Ian","Smith", email = "ianc.smith@mail.utoronto.ca", role = c("aut")),
    person("Christopher", "Eeles", , email = "christopher.eeles@uhnresearch.ca", role = c("aut")),
    person("Benjamin", "Haibe-Kains",  email = "benjamin.haibe.kains@utoronto.ca", role = c("aut", "cre"))
    )