Utilities for manipulating chromosome names, including modifying
them to follow a particular naming style

Contains data and functions that
	define and allow translation between different chromosome
	sequence naming conventions (e.g., "chr1" versus "1"),
	including a function that attempts to place sequence names in
	their natural, rather than lexicographic, order.

Sonali Arora, Martin Morgan, Marc Carlson, H. Pagès

stats, stats4, utils, RCurl, GenomeInfoDbData

GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome,
BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr

utils.R rankSeqlevels.R NCBI-utils.R UCSC-utils.R
Ensembl-utils.R getChromInfoFromNCBI.R getChromInfoFromUCSC.R
getChromInfoFromEnsembl.R fetchExtendedChromInfoFromUCSC.R
loadTaxonomyDb.R mapGenomeBuilds.R seqinfo.R Seqinfo-class.R
seqlevelsStyle.R seqlevels-wrappers.R GenomeDescription-class.R
zzz.R

Functions for Base Types and Core R and 'Tidyverse' Features

A toolbox for working with base types, core R features
  like the condition system, and core 'Tidyverse' features like tidy
  evaluation.

c(
    person("Lionel", "Henry", ,"lionel@rstudio.com", c("aut", "cre")),
    person("Hadley", "Wickham", ,"hadley@rstudio.com", "aut"),
    person("RStudio", role = "cph")
    )

cli, covr, crayon, glue, magrittr, methods, pillar,
rmarkdown, testthat (>= 2.3.0), vctrs (>= 0.2.3)

Lionel Henry [aut, cre],
  Hadley Wickham [aut],
  RStudio [cph]

Set configuration options on a per-package basis.
    Options set by a given package only apply to that package,
    other packages are unaffected.

base64enc, ggplot2, knitr, microbenchmark, R.devices, R.rsp

Functions that Apply to Rows and Columns of Matrices (and to
Vectors)

c(
  person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"),
                                 email="henrikb@braju.com"),
  person("Hector", "Corrada Bravo", role="ctb"),
  person("Robert", "Gentleman", role="ctb"),
  person("Ola", "Hossjer", role="ctb"),
  person("Harris", "Jaffee", role="ctb"),
  person("Dongcan", "Jiang", role="ctb"),
  person("Peter", "Langfelder", role="ctb"),
  person("Peter", "Hickey", role="ctb"),
  person("Brian", "Montgomery", role="ctb"))