Tools to read, write, create, and manipulate DESCRIPTION files.
    It is intended for packages that create or manipulate other packages.

assertthat, utils, R6, crayon, rprojroot

'assertions.R' 'authors-at-r.R' 'built.R' 'classes.R'
'collate.R' 'constants.R' 'deps.R' 'description.R' 'encoding.R'
'latex.R' 'non-oo-api.R' 'package-archives.R' 'read.R'
'remotes.R' 'str.R' 'syntax_checks.R' 'urls.R' 'utils.R'
'validate.R' 'version.R'

Gábor Csárdi [aut, cre],
  Kirill Müller [aut],
  Jim Hester [aut]

Jim Lemon, Ben Bolker, Sander Oom,
	Eduardo Klein, Barry Rowlingson,
	Hadley Wickham, Anupam Tyagi,
	Olivier Eterradossi, Gabor Grothendieck,
	Michael Toews, John Kane, Rolf Turner,
	Carl Witthoft, Julian Stander, Thomas Petzoldt,
	Remko Duursma, Elisa Biancotto, Ofir Levy,
	Christophe Dutang, Peter Solymos, Robby Engelmann, 
	Michael Hecker, Felix Steinbeck, Hans Borchers,
	Henrik Singmann, Ted Toal, Derek Ogle, Darshan Baral,
	Ulrike Groemping, Bill Venables

Lots of plots, various labeling, axis and color scaling functions.

Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc

Contains several basic utility functions including: moving
        (rolling, running) window statistic functions, read/write for
        GIF and ENVI binary files, fast calculation of AUC, LogitBoost
        classifier, base64 encoder/decoder, round-off-error-free sum
        and cumsum, etc.

S4 generic functions used in Bioconductor

The package defines S4 generic functions used in Bioconductor.

R (>= 4.0.0), methods, utils, graphics, stats, parallel

methods, utils, graphics, stats, parallel

Biobase, S4Vectors, IRanges, GenomicRanges, DelayedArray,
Biostrings, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2,
flowClust, MSnbase, annotate, RUnit

S3-classes-as-S4-classes.R utils.R normarg-utils.R
hotfix73465.R replaceSlots.R append.R as.data.frame.R as.list.R
as.vector.R cbind.R colSums.R do.call.R duplicated.R eval.R
Extremes.R funprog.R get.R grep.R is.unsorted.R lapply.R
mapply.R match.R mean.R nrow.R order.R paste.R rank.R rep.R
row_colnames.R sets.R sort.R start.R subset.R t.R table.R
tapply.R unique.R unlist.R unsplit.R relist.R var.R which.R
which.min.R boxplot.R image.R density.R IQR.R mad.R residuals.R
weights.R xtabs.R clusterApply.R annotation.R combine.R
dbconn.R dge.R dims.R fileName.R normalize.R Ontology.R
organism_species.R path.R plotMA.R plotPCA.R score.R strand.R
toTable.R type.R updateObject.R testPackage.R zzz.R