Lots of plots, various labeling, axis and color scaling functions.

Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc

Contains several basic utility functions including: moving
        (rolling, running) window statistic functions, read/write for
        GIF and ENVI binary files, fast calculation of AUC, LogitBoost
        classifier, base64 encoder/decoder, round-off-error-free sum
        and cumsum, etc.

S4 generic functions used in Bioconductor

The package defines S4 generic functions used in Bioconductor.

R (>= 4.0.0), methods, utils, graphics, stats, parallel

methods, utils, graphics, stats, parallel

Biobase, S4Vectors, IRanges, GenomicRanges, DelayedArray,
Biostrings, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2,
flowClust, MSnbase, annotate, RUnit

S3-classes-as-S4-classes.R utils.R normarg-utils.R
hotfix73465.R replaceSlots.R append.R as.data.frame.R as.list.R
as.vector.R cbind.R colSums.R do.call.R duplicated.R eval.R
Extremes.R funprog.R get.R grep.R is.unsorted.R lapply.R
mapply.R match.R mean.R nrow.R order.R paste.R rank.R rep.R
row_colnames.R sets.R sort.R start.R subset.R t.R table.R
tapply.R unique.R unlist.R unsplit.R relist.R var.R which.R
which.min.R boxplot.R image.R density.R IQR.R mad.R residuals.R
weights.R xtabs.R clusterApply.R annotation.R combine.R
dbconn.R dge.R dims.R fileName.R normalize.R Ontology.R
organism_species.R path.R plotMA.R plotPCA.R score.R strand.R
toTable.R type.R updateObject.R testPackage.R zzz.R

Bioconductor facilities for parallel evaluation

c(
    person("Bioconductor Package Maintainer",
        email="maintainer@bioconductor.org", role="cre"),
    person("Martin", "Morgan", role="aut"),
    person("Valerie", "Obenchain", role="aut"),
    person("Michel", "Lang", email="michellang@gmail.com", role="aut"),
    person("Ryan", "Thompson", email="rct@thompsonclan.org", role="aut"),
    person("Nitesh", "Turaga", role="aut"))

This package provides modified versions and novel
    implementation of functions for parallel evaluation, tailored to
    use with Bioconductor objects.