stats, utils, futile.logger, parallel, snow

BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,
Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14,
TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,
Rsamtools, GenomicAlignments, ShortRead, codetools, RUnit,
BiocStyle, knitr, batchtools, data.table

AllGenerics.R DeveloperInterface.R prototype.R bploop.R
ErrorHandling.R log.R bpbackend-methods.R bpisup-methods.R
bplapply-methods.R bpiterate-methods.R bpstart-methods.R
bpstop-methods.R BiocParallelParam-class.R bpmapply-methods.R
bpschedule-methods.R bpvec-methods.R bpvectorize-methods.R
bpworkers-methods.R bpaggregate-methods.R bpvalidate.R
SnowParam-class.R MulticoreParam-class.R
TransientMulticoreParam-class.R register.R SerialParam-class.R
DoparParam-class.R SnowParam-utils.R BatchJobsParam-class.R
BatchtoolsParam-class.R progress.R ipcmutex.R utilities.R
internal_rng_stream.R

Bioconductor Package Maintainer [cre],
  Martin Morgan [aut],
  Valerie Obenchain [aut],
  Michel Lang [aut],
  Ryan Thompson [aut],
  Nitesh Turaga [aut]

Functions for Plotting Graphical Shapes, Colors

Functions for plotting graphical shapes
  such as ellipses, circles, cylinders, arrows, ...

Utilities for manipulating chromosome names, including modifying
them to follow a particular naming style

Contains data and functions that
	define and allow translation between different chromosome
	sequence naming conventions (e.g., "chr1" versus "1"),
	including a function that attempts to place sequence names in
	their natural, rather than lexicographic, order.

Sonali Arora, Martin Morgan, Marc Carlson, H. Pagès

stats, stats4, utils, RCurl, GenomeInfoDbData

GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome,
BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr

utils.R rankSeqlevels.R NCBI-utils.R UCSC-utils.R
Ensembl-utils.R getChromInfoFromNCBI.R getChromInfoFromUCSC.R
getChromInfoFromEnsembl.R fetchExtendedChromInfoFromUCSC.R
loadTaxonomyDb.R mapGenomeBuilds.R seqinfo.R Seqinfo-class.R
seqlevelsStyle.R seqlevels-wrappers.R GenomeDescription-class.R
zzz.R