testthat, covr, magrittr, crayon, knitr, rmarkdown, DBI,
RSQLite, R.utils, forcats, microbenchmark, rprintf, stringr,
ggplot2, dplyr, withr, vctrs (>= 0.3.0)

Data analysis, linear models and differential expression for microarray data.

Gordon Smyth [cre,aut], Yifang Hu [ctb], Matthew Ritchie [ctb], Jeremy Silver [ctb], James Wettenhall [ctb], Davis McCarthy [ctb], Di Wu [ctb], Wei Shi [ctb], Belinda Phipson [ctb], Aaron Lun [ctb], Natalie Thorne [ctb], Alicia Oshlack [ctb], Carolyn de Graaf [ctb], Yunshun Chen [ctb], Mette Langaas [ctb], Egil Ferkingstad [ctb], Marcus Davy [ctb], Francois Pepin [ctb], Dongseok Choi [ctb]

grDevices, graphics, stats, utils, methods

affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,
gplots, illuminaio, locfit, MASS, org.Hs.eg.db, splines,
statmod (>= 1.2.2), vsn

ExonArray, GeneExpression, Transcription,
AlternativeSplicing, DifferentialExpression,
DifferentialSplicing, GeneSetEnrichment, DataImport, Bayesian,
Clustering, Regression, TimeCourse, Microarray, MicroRNAArray,
mRNAMicroarray, OneChannel, ProprietaryPlatforms, TwoChannel,
Sequencing, RNASeq, BatchEffect, MultipleComparison,
Normalization, Preprocessing, QualityControl,
BiomedicalInformatics, CellBiology, Cheminformatics,
Epigenetics, FunctionalGenomics, Genetics, ImmunoOncology,
Metabolomics, Proteomics, SystemsBiology, Transcriptomics

Provides a wrapper for the download.file function,
    making it possible to download files over HTTPS on Windows, Mac OS X, and
    other Unix-like platforms. The 'RCurl' package provides this functionality
    (and much more) but can be difficult to install because it must be compiled
    with external dependencies. This package has no external dependencies, so
    it is much easier to install.

Dirk Eddelbuettel <edd@debian.org> with contributions 
 by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek,
 Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen,
 Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx, 
 Michel Lang, Viliam Simko, Kurt Hornik, Radford Neal, Kendon Bell,
 Matthew de Queljoe, Ion Suruceanu, and Bill Denney.