Create Compact Hash Digests of R Objects

Implementation of a function 'digest()' for the creation 
 of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 
 'crc32', 'xxhash', 'murmurhash' and 'spookyhash' algorithms) permitting easy
 comparison of R language objects, as well as functions such as'hmac()' to
 create hash-based message authentication code. Please note that this package
 is not meant to be deployed for cryptographic purposes for which more
 comprehensive (and widely tested) libraries such as 'OpenSSL' should be
 used.

Representation and manipulation of genomic intervals

The ability to efficiently represent and manipulate genomic
	annotations and alignments is playing a central role when it comes
	to analyzing high-throughput sequencing data (a.k.a. NGS data).
	The GenomicRanges package defines general purpose containers for
	storing and manipulating genomic intervals and variables defined along
	a genome. More specialized containers for representing and manipulating
	short alignments against a reference genome, or a matrix-like
	summarization of an experiment, are defined in the GenomicAlignments
	and SummarizedExperiment packages, respectively. Both packages build
	on top of the GenomicRanges infrastructure.

Genetics, Infrastructure, DataRepresentation, Sequencing,
Annotation, GenomeAnnotation, Coverage

Matrix, Biobase, AnnotationDbi, annotate, Biostrings (>=
2.25.3), SummarizedExperiment (>= 0.1.5), Rsamtools (>=
1.13.53), GenomicAlignments, rtracklayer, BSgenome,
GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub,
DESeq2, DEXSeq, edgeR, KEGGgraph, RNAseqData.HNRNPC.bam.chr14,
pasillaBamSubset, KEGG.db, hgu95av2.db, hgu95av2probe,
BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Mmusculus.UCSC.mm10,
TxDb.Athaliana.BioMart.plantsmart22,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, RUnit, digest, knitr,
BiocStyle

normarg-utils.R utils.R phicoef.R transcript-utils.R
constraint.R strand-utils.R genomic-range-squeezers.R
GenomicRanges-class.R GenomicRanges-comparison.R
GRanges-class.R GPos-class.R GRangesFactor-class.R
DelegatingGenomicRanges-class.R GNCList-class.R
GenomicRangesList-class.R GRangesList-class.R
makeGRangesFromDataFrame.R makeGRangesListFromDataFrame.R
RangedData-methods.R findOverlaps-methods.R
intra-range-methods.R inter-range-methods.R coverage-methods.R
setops-methods.R nearest-methods.R absoluteRanges.R
tileGenome.R tile-methods.R genomicvars.R zzz.R