This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.

Set configuration options on a per-package basis.
    Options set by a given package only apply to that package,
    other packages are unaffected.

Jim Lemon, Ben Bolker, Sander Oom,
	Eduardo Klein, Barry Rowlingson,
	Hadley Wickham, Anupam Tyagi,
	Olivier Eterradossi, Gabor Grothendieck,
	Michael Toews, John Kane, Rolf Turner,
	Carl Witthoft, Julian Stander, Thomas Petzoldt,
	Remko Duursma, Elisa Biancotto, Ofir Levy,
	Christophe Dutang, Peter Solymos, Robby Engelmann, 
	Michael Hecker, Felix Steinbeck, Hans Borchers,
	Henrik Singmann, Ted Toal, Derek Ogle, Darshan Baral,
	Ulrike Groemping, Bill Venables

Lots of plots, various labeling, axis and color scaling functions.

Data analysis, linear models and differential expression for microarray data.

Gordon Smyth [cre,aut], Yifang Hu [ctb], Matthew Ritchie [ctb], Jeremy Silver [ctb], James Wettenhall [ctb], Davis McCarthy [ctb], Di Wu [ctb], Wei Shi [ctb], Belinda Phipson [ctb], Aaron Lun [ctb], Natalie Thorne [ctb], Alicia Oshlack [ctb], Carolyn de Graaf [ctb], Yunshun Chen [ctb], Mette Langaas [ctb], Egil Ferkingstad [ctb], Marcus Davy [ctb], Francois Pepin [ctb], Dongseok Choi [ctb]

grDevices, graphics, stats, utils, methods

affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,
gplots, illuminaio, locfit, MASS, org.Hs.eg.db, splines,
statmod (>= 1.2.2), vsn

ExonArray, GeneExpression, Transcription,
AlternativeSplicing, DifferentialExpression,
DifferentialSplicing, GeneSetEnrichment, DataImport, Bayesian,
Clustering, Regression, TimeCourse, Microarray, MicroRNAArray,
mRNAMicroarray, OneChannel, ProprietaryPlatforms, TwoChannel,
Sequencing, RNASeq, BatchEffect, MultipleComparison,
Normalization, Preprocessing, QualityControl,
BiomedicalInformatics, CellBiology, Cheminformatics,
Epigenetics, FunctionalGenomics, Genetics, ImmunoOncology,
Metabolomics, Proteomics, SystemsBiology, Transcriptomics

Original S code by Richard A. Becker and Allan R. Wilks.
	R version by Ray Brownrigg.
        Enhancements by Thomas P Minka and Alex Deckmyn.