This package provides modified versions and novel
    implementation of functions for parallel evaluation, tailored to
    use with Bioconductor objects.

stats, utils, futile.logger, parallel, snow

BiocGenerics, tools, foreach, BatchJobs, BBmisc, doParallel,
Rmpi, GenomicRanges, RNAseqData.HNRNPC.bam.chr14,
TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation,
Rsamtools, GenomicAlignments, ShortRead, codetools, RUnit,
BiocStyle, knitr, batchtools, data.table

AllGenerics.R DeveloperInterface.R prototype.R bploop.R
ErrorHandling.R log.R bpbackend-methods.R bpisup-methods.R
bplapply-methods.R bpiterate-methods.R bpstart-methods.R
bpstop-methods.R BiocParallelParam-class.R bpmapply-methods.R
bpschedule-methods.R bpvec-methods.R bpvectorize-methods.R
bpworkers-methods.R bpaggregate-methods.R bpvalidate.R
SnowParam-class.R MulticoreParam-class.R register.R
SerialParam-class.R DoparParam-class.R SnowParam-utils.R
BatchJobsParam-class.R BatchtoolsParam-class.R progress.R
ipcmutex.R utilities.R zzz.R

Bioconductor Package Maintainer [cre],
  Martin Morgan [aut],
  Valerie Obenchain [aut],
  Michel Lang [aut],
  Ryan Thompson [aut],
  Nitesh Turaga [aut]

Functions to assist in R programming, including:
  - assist in developing, updating, and maintaining R and R packages ('ask', 'checkRVersion',
    'getDependencies', 'keywords', 'scat'),
  - calculate the logit and inverse logit transformations ('logit', 'inv.logit'),
  - test if a value is missing, empty or contains only NA and NULL values ('invalid'),
  - manipulate R's .Last function ('addLast'),
  - define macros ('defmacro'),
  - detect odd and even integers ('odd', 'even'),
  - convert strings containing non-ASCII characters (like single quotes) to plain ASCII ('ASCIIfy'),
  - perform a binary search ('binsearch'),
  - sort strings containing both numeric and character components ('mixedsort'),
  - create a factor variable from the quantiles of a continuous variable ('quantcut'),
  - enumerate permutations and combinations ('combinations', 'permutation'),
  - calculate and convert between fold-change and log-ratio ('foldchange',
    'logratio2foldchange', 'foldchange2logratio'),
  - calculate probabilities and generate random numbers from Dirichlet distributions
    ('rdirichlet', 'ddirichlet'),
  - apply a function over adjacent subsets of a vector ('running'),
  - modify the TCP\_NODELAY ('de-Nagle') flag for socket objects,
  - efficient 'rbind' of data frames, even if the column names don't match ('smartbind'),
  - generate significance stars from p-values ('stars.pval'),
  - convert characters to/from ASCII codes ('asc', 'chr'),
  - convert character vector to ASCII representation ('ASCIIfy').