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b/partyMod/inst/NEWS |
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CHANGES IN party VERSION 1.0-16 (2014-08-18) |
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o import("grid") |
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CHANGES IN party VERSION 1.0-15 (2014-06-26) |
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o allow for missing predictor values in new varimp for |
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right-censored responses |
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11 |
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o introduce varperm argument to R_get_nodeID |
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CHANGES IN party VERSION 1.0-14 (2014-05-30) |
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o add experimental varimp() for right-censored responses |
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CHANGES IN party VERSION 1.0-13 (2014-02-01) |
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21 |
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o deal with protection issues in R-devel |
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CHANGES IN party VERSION 1.0-12 (2014-01-15) |
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o mammoexp -> TH.data |
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CHANGES IN party VERSION 1.0-11 (2013-12-13) |
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31 |
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o deal with empty levels for teststat = "quad" |
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(bug reported by Wei-Yin Loh <loh@stat.wisc.edu>) |
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34 |
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35 |
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CHANGES IN party VERSION 1.0-10 (2013-10-24) |
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37 |
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o new demo "strucchange-perm" |
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o proximity has newdata argument |
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41 |
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42 |
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43 |
CHANGES IN party VERSION 1.0-9 (2013-09-02) |
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44 |
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o export initVariableFrame (for usage in RWeka only) |
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46 |
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o fix NAMESPACE problems |
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48 |
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o data is in TH.data, not ipred anymore |
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50 |
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51 |
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CHANGES IN party VERSION 1.0-8 (2013-07-11) |
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53 |
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o update mvtdist |
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55 |
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o documentation update |
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57 |
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58 |
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59 |
CHANGES IN party VERSION 1.0-7 (2013-05-31) |
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60 |
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o ctree and cforest ignored the scores argument for the |
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response. Spotted and fixed by Silke Janitza |
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<janitza@ibe.med.uni-muenchen.de>. |
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65 |
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CHANGES IN party VERSION 1.0-6 (2013-01-09) |
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67 |
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o use hist()$density instead of hist()$Intensities as |
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reported by R 3.0.0 to be |
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70 |
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71 |
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72 |
CHANGES IN party VERSION 1.0-5 (2013-01-07) |
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73 |
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o fix class problem reported by R 3.0.0 to be |
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75 |
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76 |
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77 |
CHANGES IN party VERSION 1.0-4 (2012-12-18) |
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78 |
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o export varimpAUC() |
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80 |
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o add where() method for RandomForest class |
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82 |
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83 |
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84 |
CHANGES IN party VERSION 1.0-3 (2012-09-26) |
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85 |
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o new function varimpAUC() for AUC-based variable importance measures |
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87 |
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o the `weights' argument in cforest() can now be used to define |
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alternative case weights for each of the trees in the forest. |
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90 |
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91 |
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92 |
CHANGES IN party VERSION 1.0-2 (2012-04-26) |
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93 |
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o version 1.0-0 introduced a new bug in plotting Kaplan-Meier curves |
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when fixing the weight problem in survfit; the x-axis labels where |
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incorrect. Spotted by Sarah Vowler <Sarah.Vowler@cancer.org.uk>. |
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97 |
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98 |
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99 |
CHANGES IN party VERSION 1.0-1 (2012-03-23) |
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100 |
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o fix -Werror warnings suggested by Murray Stokely <mstokely@google.com> |
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102 |
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o make sure no factor variables are evaluated as surrogate split |
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104 |
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o fix confusing warning messages in varimp and check |
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for non-unity weights |
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107 |
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108 |
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109 |
CHANGES IN party VERSION 1.0-0 (2012-02-17) |
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110 |
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o varimp can now partially deal with missing values |
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112 |
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o Kaplan-Meier curves are now computed _after_ removing |
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zero case weights (see comment in ?survfit); plots may change |
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slightly. |
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116 |
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o use cforest_unbiased instead of cforest_control/cforest_classical |
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in examples and regression tests |
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119 |
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120 |
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121 |
CHANGES IN party VERSION 0.9-99996 (2011-12-20) |
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122 |
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o don't ship doxygen documentation with package |
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124 |
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o ctree() and cforest() don't handle `-' in formulae, |
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warning added to Rd files |
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127 |
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128 |
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129 |
CHANGES IN party VERSION 0.9-99995 (2011-10-27) |
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130 |
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o observations with missing values in newdata might not have gone |
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with the majority in predict(<ctree>, newdata) when no surrogate |
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split was applicable. Spotted and fixed by |
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Vik <viknesh@stat.ufl.edu>. |
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135 |
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136 |
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137 |
CHANGES IN party VERSION 0.9-99994 (2011-08-22) |
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138 |
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139 |
o reuse classes exported by coin |
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140 |
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141 |
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142 |
CHANGES IN party VERSION 0.9-99993 (2011-07-26) |
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143 |
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144 |
o attach NAMESPACE properly in tests |
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145 |
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146 |
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147 |
CHANGES IN party VERSION 0.9-99992 (2011-05-02) |
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148 |
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149 |
o fix partial matching problems |
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150 |
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151 |
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152 |
CHANGES IN party VERSION 0.9-99991 (2010-11-19) |
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153 |
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154 |
o fix tests/ dependencies |
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155 |
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156 |
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157 |
CHANGES IN party VERSION 0.9-9999 (2010-09-13) |
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158 |
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159 |
o add update slots to tree and forest objects (later to be used |
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for crossvalidation) |
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161 |
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162 |
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163 |
CHANGES IN party VERSION 0.9-9998 (2010-08-23) |
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164 |
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165 |
o allow for internal permutations in predict via R_predict2 |
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166 |
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167 |
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168 |
CHANGES IN party VERSION 0.9-9997 (2010-07-06) |
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169 |
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170 |
o update mvt.f (see mvtnorm) |
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171 |
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172 |
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173 |
CHANGES IN party VERSION 0.9-9996 (2010-06-24) |
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174 |
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175 |
o print progress bar while forest grows (via trace = TRUE |
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176 |
in cforest_control()) |
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177 |
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178 |
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179 |
CHANGES IN party VERSION 0.9-9995 (2010-05-19) |
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180 |
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181 |
o assignment of observations based on surrogate splits |
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during fitting might have failed; observations went |
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183 |
with majority (in a sub-optimal way) |
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184 |
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185 |
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186 |
CHANGES IN party VERSION 0.9-9994 (2010-04-14) |
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187 |
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188 |
o varimp() gives warning for non-unity weights |
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189 |
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190 |
o "no admissible split found" warnings disabled |
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191 |
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192 |
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193 |
CHANGES IN party VERSION 0.9-9993 (2010-03-04) |
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194 |
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o just internals needed for mboost |
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196 |
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197 |
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198 |
CHANGES IN party VERSION 0.9-9992 (2010-02-26) |
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199 |
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200 |
o Bug fix in mob plotting for anova models |
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201 |
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202 |
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203 |
CHANGES IN party VERSION 0.9-9991 (2010-01-27) |
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204 |
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205 |
o Bug fix in error handling of mob(). |
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206 |
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207 |
CHANGES IN party VERSION 0.9-999 (2009-09-24) |
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208 |
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209 |
o minbucket was erronously interpreted as minbucket + 1 |
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210 |
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211 |
o p-values for teststat = "max" were wrong |
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in the uncommon case of zero variances |
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213 |
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214 |
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215 |
CHANGES IN party VERSION 0.9-998 (2009-06-17) |
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216 |
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o mtry may vary with tree depth |
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218 |
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o finding surrogate variables may have failed, fixed. |
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220 |
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221 |
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222 |
CHANGES IN party VERSION 0.9-997 (2009-06-04) |
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223 |
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224 |
o documentation fixes |
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225 |
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226 |
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227 |
CHANGES IN party VERSION 0.9-996 (2009-03-27) |
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228 |
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229 |
o survival fixes |
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230 |
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231 |
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232 |
CHANGES IN party VERSION 0.9-994 (2009-02-10) |
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233 |
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o fix bug in new varimp function (which was triggered |
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by splits in categorical variables) |
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236 |
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237 |
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238 |
CHANGES IN party VERSION 0.9-993 (2009-01-29) |
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239 |
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o new C-level function R_remove_weights |
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241 |
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242 |
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243 |
CHANGES IN party VERSION 0.9-992 (2009-01-19) |
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244 |
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o update CITATION file |
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246 |
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247 |
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CHANGES IN party VERSION 0.9-991 (2009-01-13) |
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249 |
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o new conditional variable importance measure |
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(Strobl et al., 2008, BMC Bioinformatics) available. |
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254 |
CHANGES IN party VERSION 0.9-99 (2008-10-28) |
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255 |
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o a suboptimal split was implemented when the best |
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split corresponded to the last row of <data> due to |
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a coding error. This should have happend only very |
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rarely, however, the glaucoma example is affected. |
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CHANGES IN party VERSION 0.9-98 (2008-10-15) |
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263 |
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o don't compute ordering of censored variables (thanks to |
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Brian D. Ripley for the report) |
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266 |
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o experimental version of partialPlot for cforests |
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268 |
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o teststat = "quad" and testtype = "Univariate" produced |
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wrong criteria in the presence of constant exploratory variables. |
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Spotted by Sebastian Wietzke <Sebastian.Wietzke@axa.de> |
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CHANGES IN party VERSION 0.9-97 (2008-06-26) |
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o predictions for new data containing missing values were |
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wrong. Bug spotted by Wei-Yin Loh <loh@stat.wisc.edu> |
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278 |
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o vignette updates |
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CHANGES IN party VERSION 0.9-96 (2008-06-06) |
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283 |
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o make searching for surrogate splits a little more stable |
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CHANGES IN party VERSION 0.9-95 (2008-02-27) |
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288 |
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o proximity() now gives _relative_ numbers |
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(similar to `randomForest'), not absolute numbers |
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long-standing feature request by Henric Nilsson |
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CHANGES IN party VERSION 0.9-94 (2008-01-30) |
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o documentation updates |
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297 |
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298 |
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299 |
CHANGES IN party VERSION 0.9-93 (2007-11-30) |
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300 |
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o It is now an error to ask for more surrogate variables |
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than actually available. Thanks to Henric Nilsson. |
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CHANGES IN party VERSION 0.9-92 (2007-11-22) |
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o predict(<ctree-object>) computed predictions |
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for observations with zero weights (by passing them down the tree). |
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This was already done this way by predict(<cforest-object>) but resulted |
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in an error for ctree()s. |
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311 |
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o minbucket added to ctree_control() |
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CHANGES IN party VERSION 0.9-91 (2007-09-26) |
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316 |
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o bugfix: NAs in factors lead to segfaults on 64bit machines |
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as reported by Carolin Strobl <carolin.strobl@lmu.de> |
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319 |
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o related to this: be more careful when splitting in |
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variables containing missing values, especially factors. |
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322 |
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o add examples to regression tests |
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324 |
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o new function `proximity' (feature request by Henric Nilsson) |
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326 |
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CHANGES IN party VERSION 0.9-90 (2007-09-24) |
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329 |
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o new defaults for `control' argument of `cforest': unbiased |
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forests are now grown by default |
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332 |
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o new defaults for binary classification tree visualization: |
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stacked bar charts are used by default. |
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335 |
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336 |
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337 |
CHANGES IN party VERSION 0.9-14 (2007-07-23) |
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338 |
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339 |
o fix problem in `varimp' introduced by new weights handling |
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340 |
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341 |
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342 |
CHANGES IN party VERSION 0.9-13 (2007-07-23) |
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343 |
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344 |
o update `mvt.f' |
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345 |
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o improve the memory footprint of RandomForest objects |
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substancially (by removing the weights slots from each node). |
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348 |
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More careful revision of the predict and fitting code is needed. |
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350 |
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o predictions for cforest with multivariate response are |
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now returned in a matrix (should be a data.frame) |
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353 |
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o remove confusing `no admissible split found' warning |
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(which simply meant that the `minsplit' wasn't met). |
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CHANGES IN party VERSION 0.9-12 (2007-06-28) |
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359 |
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o adjust to coin 0.6-4 |
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361 |
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362 |
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CHANGES IN party VERSION 0.9-11 (2007-06-11) |
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364 |
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365 |
o populate `where' slot in `mob' objects. |
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366 |
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o `mob_control' now has an `na.action' argument |
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368 |
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o cforest with replace = FALSE, fraction = ... |
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can now deal with weights (spotted by Carolin Strobl |
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<carolin.strobl@stat.uni-muenchen.de>) |
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372 |
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o interface to LAPACK (`dgesdd' for computing a SVD) |
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directly. As a side-effect, the svdmem class can be |
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375 |
simplified and no memory allocation during |
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tree growing is necessary (which results in a measureable |
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performance gain) |
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378 |
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CHANGES IN party VERSION 0.9-10 (2007-02-28) |
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381 |
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o internal infrastructure for fit(x, y) interfaces, |
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including a VariableFrame method for matrices. |
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384 |
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o deal with factors with only one level and variables where |
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all observations are NA |
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387 |
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o don't compute design matrices in `ModelEnvFormula' |
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CHANGES IN party VERSION 0.9-9 (2007-02-02) |
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392 |
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o internal changes to data objects: joint transformations |
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only necessary for response variables (new class `ResponseFrame') |
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but we need to distinguish between testing (using ranks, for |
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example) and prediction (means of raw data!). |
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Problem spotted by Henric Nilsson <nilsson.henric@gmail.com>. |
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CHANGES IN party VERSION 0.9-8 (2007-01-15) |
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402 |
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403 |
o thicker median lines in boxplots |
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404 |
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405 |
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406 |
CHANGES IN party VERSION 0.9-7 (2007-01-15) |
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407 |
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408 |
o fix problems with multivariate response variables |
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(spotted by Henric Nilsson <henric.nilsson@sorch.se>) |
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410 |
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411 |
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412 |
CHANGES IN party VERSION 0.9-6 (2006-11-28) |
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413 |
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414 |
o R-2.5.0 does not allow to change the storage.mode of factors |
|
|
415 |
|
|
|
416 |
|
|
|
417 |
CHANGES IN party VERSION 0.9-5 (2006-10-27) |
|
|
418 |
|
|
|
419 |
o adjusted p values computed with testtype = "MonteCarlo" |
|
|
420 |
did not take dimensionality of the underlying linear statistics |
|
|
421 |
into account. It is now ensured that _p values_ are resampled, |
|
|
422 |
not test statistics. |
|
|
423 |
|
|
|
424 |
o fix escape problems |
|
|
425 |
|
|
|
426 |
|
|
|
427 |
CHANGES IN party VERSION 0.9-4 (2006-09-15) |
|
|
428 |
|
|
|
429 |
o make sure `maxsurrogates' exceeds number of input variables |
|
|
430 |
|
|
|
431 |
o fix problems reported by valgrind |
|
|
432 |
|
|
|
433 |
|
|
|
434 |
CHANGES IN party VERSION 0.9-3 (2006-09-08) |
|
|
435 |
|
|
|
436 |
o don't call RNG functions in mvt (this is done in C code, once) |
|
|
437 |
|
|
|
438 |
|
|
|
439 |
CHANGES IN party VERSION 0.9-2 (2006-09-07) |
|
|
440 |
|
|
|
441 |
o mob() can't currently handle missing values, |
|
|
442 |
they are removed and a warning is given. |
|
|
443 |
|
|
|
444 |
o add `methods' and `vcd' to Depends: |
|
|
445 |
|
|
|
446 |
|
|
|
447 |
CHANGES IN party VERSION 0.9-0 (2006-08-31) |
|
|
448 |
|
|
|
449 |
o node_barplot() can now also draw stacked barplots. |
|
|
450 |
|
|
|
451 |
o simplify handling of ordinal variables. It is now possible |
|
|
452 |
to have multiple (ordinal) response variables. |
|
|
453 |
|
|
|
454 |
o some documentation updates |
|
|
455 |
|
|
|
456 |
o fix problems with NA handling for factors |
|
|
457 |
|
|
|
458 |
o make sure minsplit criterion applies in the presence of missing |
|
|
459 |
values. Bug spotted by Han Lee <Han.Lee@geodecapital.com>. |
|
|
460 |
|
|
|
461 |
|
|
|
462 |
CHANGES IN party VERSION 0.8-8 (2006-08-23) |
|
|
463 |
|
|
|
464 |
o export `varimp' (variable importance measures for cforest()) |
|
|
465 |
|
|
|
466 |
o documentation updates |
|
|
467 |
|
|
|
468 |
o add codetools checks |
|
|
469 |
|
|
|
470 |
|
|
|
471 |
CHANGES IN party VERSION 0.8-7 (2006-07-17) |
|
|
472 |
|
|
|
473 |
o REAL(NULL) now gives an error in C code and scores could be |
|
|
474 |
potentially NULL: fixed for the time being. |
|
|
475 |
|
|
|
476 |
o add `show' method for BinaryTree and RandomForest objects |
|
|
477 |
|
|
|
478 |
|
|
|
479 |
CHANGES IN party VERSION 0.8-6 (2006-05-22) |
|
|
480 |
|
|
|
481 |
o add some validity checks for hyper parameters |
|
|
482 |
|
|
|
483 |
o add function `varimp' for computing variable importance |
|
|
484 |
measures for some random forests (this is still experimental and |
|
|
485 |
thus not exported yet, so use `party:::varimp') |
|
|
486 |
|
|
|
487 |
|
|
|
488 |
CHANGES IN party VERSION 0.8-5 (2006-04-25) |
|
|
489 |
|
|
|
490 |
o all hyper parameters to `cforest' are now controlled using |
|
|
491 |
objects of a new class `ForestControl' which can be created using |
|
|
492 |
`cforest_control()'. |
|
|
493 |
|
|
|
494 |
o sampling of a fraction of the observations without replacement |
|
|
495 |
is now available for the `cforest' implementation of random forest. |
|
|
496 |
|
|
|
497 |
|
|
|
498 |
CHANGES IN party VERSION 0.8-4 (2006-04-04) |
|
|
499 |
|
|
|
500 |
o renamed argument `teststattype' to `teststat' with defaults |
|
|
501 |
c("quad", "max") in order to be compatible with the `coin' package, |
|
|
502 |
version >= 0.4-5 |
|
|
503 |
|
|
|
504 |
o use `1 - (1 - p)^k' instead of `p * k' for Bonferroni-adjustment. |
|
|
505 |
Node 7 for the `GlaucomaM' data is now splitted in addition (in tms). |
|
|
506 |
|
|
|
507 |
|
|
|
508 |
CHANGES IN party VERSION 0.8-3 (2006-03-20) |
|
|
509 |
|
|
|
510 |
o `predict' returned nonsensical results in case a tree was |
|
|
511 |
fitted to a multivariate response variable. Now a list with one |
|
|
512 |
element for each observation is returned. |
|
|
513 |
|
|
|
514 |
|
|
|
515 |
CHANGES IN party VERSION 0.8-2 (2006-03-01) |
|
|
516 |
|
|
|
517 |
o plotting buglets fixed: improved axis in MOB plots, |
|
|
518 |
correct (transparent) background on jpeg() and png() devices. |
|
|
519 |
|
|
|
520 |
|
|
|
521 |
CHANGES IN `party' VERSION 0.8-1 (2006-02-23) |
|
|
522 |
|
|
|
523 |
o `testtype' can be Bonferroni, MonteCarlo, Univariate and |
|
|
524 |
Teststatistic (instead of Raw) |
|
|
525 |
|
|
|
526 |
o removed unnecessary constraint on weights in `cforest' |
|
|
527 |
|
|
|
528 |
o maximize raw test statistics for random forest by default. |
|
|
529 |
|
|
|
530 |
|
|
|
531 |
CHANGES IN `party' VERSION 0.8-0 (2006-02-15) |
|
|
532 |
|
|
|
533 |
o `cforest', an implementation of Breiman's random forest ensemble |
|
|
534 |
algorithm based on conditional inference trees (`ctree') has been |
|
|
535 |
added. It is somewhat experimental and thus for advanced users only. |
|
|
536 |
|
|
|
537 |
o `mob', an object-oriented implementation of a recently suggested |
|
|
538 |
algorithm for model-based recursive partitioning (Zeileis, Hothorn, |
|
|
539 |
Hornik, 2005) has been added. It works out of the box for partitioning |
|
|
540 |
(generalized) linear regression models, others can be easily plugged |
|
|
541 |
in. A new vignette "MOB" describes the implementation ideas and provides |
|
|
542 |
a few examples. |
|
|
543 |
|
|
|
544 |
o new S3 generic reweight() with methods for (g)linearModel |
|
|
545 |
for re-fitting a model with different weights. |
|
|
546 |
|
|
|
547 |
o new argument `maxdepth' to `ctree_control' which allows for |
|
|
548 |
growing trees of a fixed maximum depth. |
|
|
549 |
|
|
|
550 |
o LazyData: yes |
|
|
551 |
|
|
|
552 |
|
|
|
553 |
CHANGES IN `party' VERSION 0.3-6 (2006-02-06) |
|
|
554 |
|
|
|
555 |
o use a different way to deal with NAMESPACEs during in tests/*.R |
|
|
556 |
following a suggestion by Prof. Brian D. Ripley |
|
|
557 |
|
|
|
558 |
o use LazyLoad: yes instead of SaveImage: yes |
|
|
559 |
|
|
|
560 |
|
|
|
561 |
CHANGES IN `party' VERSION 0.3-5 (2006-02-02) |
|
|
562 |
|
|
|
563 |
o make R CMD check happy and move src/README to inst/README |
|
|
564 |
|
|
|
565 |
|
|
|
566 |
CHANGES IN `party' VERSION 0.3-4 (2006-01-18) |
|
|
567 |
|
|
|
568 |
o documentation updates |
|
|
569 |
|
|
|
570 |
|
|
|
571 |
CHANGES IN `party' VERSION 0.3-3 (2006-01-18) |
|
|
572 |
|
|
|
573 |
o some new convenience functions, not exported |
|
|
574 |
|
|
|
575 |
|
|
|
576 |
CHANGES IN `party' VERSION 0.3-2 (2006-01-12) |
|
|
577 |
|
|
|
578 |
o isequal must not check equality of attributes |
|
|
579 |
|
|
|
580 |
|
|
|
581 |
CHANGES IN `party' VERSION 0.3-1 (2005-12-02) |
|
|
582 |
|
|
|
583 |
o fix bug introduced in version 0.3-0: coin:::factor_trafo applies |
|
|
584 |
treatment contrasts in case of a binary factor but we need the full |
|
|
585 |
design matrix |
|
|
586 |
|
|
|
587 |
o documentation updates |
|
|
588 |
|
|
|
589 |
|
|
|
590 |
CHANGES IN `party' VERSION 0.3-0 (2005-11-29) |
|
|
591 |
|
|
|
592 |
o `ytrafo' and `xtrafo' functions make use of `coin:::trafo' now, |
|
|
593 |
i.e. the handling of influence functions and transformations |
|
|
594 |
has been unified in packages `party' and `coin' |
|
|
595 |
|
|
|
596 |
|
|
|
597 |
CHANGES IN `party' VERSION 0.2-10 (2005-11-08) |
|
|
598 |
|
|
|
599 |
o new slot `data' in BinaryTree objects, slots inputnames and levels |
|
|
600 |
have been removed |
|
|
601 |
|
|
|
602 |
|
|
|
603 |
CHANGES IN `party' VERSION 0.2-9 (2005-10-19) |
|
|
604 |
|
|
|
605 |
o splits in categorical variables could have failed due |
|
|
606 |
to weired internal checks |
|
|
607 |
|
|
|
608 |
|
|
|
609 |
CHANGES IN `party' VERSION 0.2-8 (2005-08-06) |
|
|
610 |
|
|
|
611 |
o fix problems reported by codetools |
|
|
612 |
|
|
|
613 |
|
|
|
614 |
CHANGES IN `party' VERSION 0.2-7 (2005-08-31) |
|
|
615 |
|
|
|
616 |
o extract inputs using menv@get("input", data = newdata) in predict |
|
|
617 |
|
|
|
618 |
|
|
|
619 |
CHANGES IN `party' VERSION 0.2-6 (2005-08-29) |
|
|
620 |
|
|
|
621 |
o make gfortran happy |
|
|
622 |
|
|
|
623 |
|
|
|
624 |
CHANGES IN `party' VERSION 0.2-5 (2005-08-19) |
|
|
625 |
|
|
|
626 |
o ctree() now searches the global environment for variables given |
|
|
627 |
in `formula' when the `data' argument is unspecified. |
|
|
628 |
|
|
|
629 |
|
|
|
630 |
CHANGES IN `party' VERSION 0.2-4 (2005-07-07) |
|
|
631 |
|
|
|
632 |
o names of `criterion' element in `SplittingNode' objects were wrong |
|
|
633 |
|
|
|
634 |
o categorical splits with `ctree_control(testtype = "MonteCarlo")' |
|
|
635 |
were potentially wrong |
|
|
636 |
|
|
|
637 |
|
|
|
638 |
CHANGES IN `party' VERSION 0.2-3 (2005-06-29) |
|
|
639 |
|
|
|
640 |
o print and plot only levels which are available in a node (for nominal |
|
|
641 |
splits) |
|
|
642 |
|
|
|
643 |
|
|
|
644 |
CHANGES IN `party' VERSION 0.2-2 (2005-06-27) |
|
|
645 |
|
|
|
646 |
o ./src/Makedeps will be automatically generated (on Windows) |
|
|
647 |
and must not be part of the source-package. |
|
|
648 |
|
|
|
649 |
o vignette cosmetics |