.. only:: not i18n

  .. note::

     This documentation is written to support the QuArray application, developed for Tissue Array export

     and analysis.

     Download the `latest stable binary <https://github.com/c-arthurs/QuArray/releases>`_ and an

     `example tissue array <https://emckclac-my.sharepoint.com/:f:/g/personal/k1472221_kcl_ac_uk/EutLIT4yc3BIlmNdUnDzLNAB0AcR1qc99Pvf8w-yCcmj_A?e=LXunb4>`_

     from a previously analysed cancer tissue array (Arthurs et al, *Sci Rep 2020*), or read the

     :ref:`installation page <installation_page>` to get started.

Welcome to the official documentation of QuArray.

QuArray Documentation

=====================

.. toctree::

   :maxdepth: 3

   Installation

   Input files

   TA export

   DAB stain analysis

   Output files

   Measurements

   Acknowledgements

Before you start

================

This program is optimised to to run on most up to date MacOS, Linux, and Windows operating systems.

If there are any problems getting it working then please submit a issue through GitHub.

We would love to receive any pull requests for new features and bug fixes.

Quick start guide

=================

#. Download the `latest stable binary <https://github.com/c-arthurs/QuArray/releases>`_.

#. Download `mock data <https://emckclac-my.sharepoint.com/:f:/g/personal/k1472221_kcl_ac_uk/EutLIT4yc3BIlmNdUnDzLNAB0AcR1qc99Pvf8w-yCcmj_A?e=LXunb4>`_\.

   Previously analysed \(Arthurs et al, Sci Rep 2020\)\.

#. Run the program and either:

   * :ref:`Export tissue cores<Export_page>` from a Tissue Array.

   * :ref:`Analyse DAB expression<DAB_page>` in the exported images.