--- a +++ b/pathflowai/unet.py @@ -0,0 +1,116 @@ +# From https://raw.githubusercontent.com/milesial/Pytorch-UNet/master/unet/unet_model.py + +import torch +import torch.nn as nn +import torch.nn.functional as F + + +class double_conv(nn.Module): + '''(conv => BN => ReLU) * 2''' + def __init__(self, in_ch, out_ch): + super(double_conv, self).__init__() + self.conv = nn.Sequential( + nn.Conv2d(in_ch, out_ch, 3, padding=1), + nn.BatchNorm2d(out_ch), + nn.ReLU(inplace=True), + nn.Conv2d(out_ch, out_ch, 3, padding=1), + nn.BatchNorm2d(out_ch), + nn.ReLU(inplace=True) + ) + + def forward(self, x): + x = self.conv(x) + return x + + +class inconv(nn.Module): + def __init__(self, in_ch, out_ch): + super(inconv, self).__init__() + self.conv = double_conv(in_ch, out_ch) + + def forward(self, x): + x = self.conv(x) + return x + + +class down(nn.Module): + def __init__(self, in_ch, out_ch): + super(down, self).__init__() + self.mpconv = nn.Sequential( + nn.MaxPool2d(2), + double_conv(in_ch, out_ch) + ) + + def forward(self, x): + x = self.mpconv(x) + return x + + +class up(nn.Module): + def __init__(self, in_ch, out_ch, bilinear=True): + super(up, self).__init__() + + # would be a nice idea if the upsampling could be learned too, + # but my machine do not have enough memory to handle all those weights + if bilinear: + self.up = nn.Upsample(scale_factor=2, mode='bilinear', align_corners=True) + else: + self.up = nn.ConvTranspose2d(in_ch//2, in_ch//2, 2, stride=2) + + self.conv = double_conv(in_ch, out_ch) + + def forward(self, x1, x2): + x1 = self.up(x1) + + # input is CHW + diffY = x2.size()[2] - x1.size()[2] + diffX = x2.size()[3] - x1.size()[3] + + x1 = F.pad(x1, (diffX // 2, diffX - diffX//2, + diffY // 2, diffY - diffY//2)) + + # for padding issues, see + # https://github.com/HaiyongJiang/U-Net-Pytorch-Unstructured-Buggy/commit/0e854509c2cea854e247a9c615f175f76fbb2e3a + # https://github.com/xiaopeng-liao/Pytorch-UNet/commit/8ebac70e633bac59fc22bb5195e513d5832fb3bd + + x = torch.cat([x2, x1], dim=1) + x = self.conv(x) + return x + + +class outconv(nn.Module): + def __init__(self, in_ch, out_ch): + super(outconv, self).__init__() + self.conv = nn.Conv2d(in_ch, out_ch, 1) + + def forward(self, x): + x = self.conv(x) + return x + +class UNet(nn.Module): + def __init__(self, n_channels, n_classes, use_sigmoid=False, use_softmax=False): + super(UNet, self).__init__() + self.inc = inconv(n_channels, 64) + self.down1 = down(64, 128) + self.down2 = down(128, 256) + self.down3 = down(256, 512) + self.down4 = down(512, 512) + self.up1 = up(1024, 256) + self.up2 = up(512, 128) + self.up3 = up(256, 64) + self.up4 = up(128, 64) + self.outc = outconv(64, n_classes) + self.sigmoid = nn.Sequential(nn.Sigmoid() if use_sigmoid else nn.Dropout(p=0.),nn.LogSoftmax(dim=1) if use_softmax else nn.Dropout(p=0.)) + + def forward(self, x): + x1 = self.inc(x) + x2 = self.down1(x1) + x3 = self.down2(x2) + x4 = self.down3(x3) + x5 = self.down4(x4) + x = self.up1(x5, x4) + x = self.up2(x, x3) + x = self.up3(x, x2) + x = self.up4(x, x1) + x = self.outc(x) + return self.sigmoid(x)