MediAug Documentation

Overview

MediAug is a set of tools for data augmentation of histology slides. It is primaraly developed for cervical cancer by augmenting Pap smear slides. However, it can be extended to any cell data that has an image and mask of different types of cells. Currently supports general image augmentation techniques as well as specialized ones like cell insertion and blending.

Installation

To install:

$ git clone https://github.com/smwade/MediAug
$ python setup.py install

CLI

MediAug comes with a CLI with useful scripts. These include:

• generate-augment-dataset
• prepare-pix2pix-images
• resize-images

The list of all can be seen with the command

$ mediaug --help

Jupyter Notebooks

As a brief intro to the package there are several jupyter notbooks. These go over things like loading the data, using augmentation operations, and creating a processing pipeline.