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b/mediaug/download.py |
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import os |
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from os.path import join |
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from pathlib import Path |
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import urllib.request |
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import zipfile |
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def download_sipakmed(data_dest=None): |
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""" Download the SIPaKMeD dataset, http://cs.uoi.gr/~marina |
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Args: |
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data_dest (str): The path of dir to store data. If noe will default to package cache |
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Returns: |
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None |
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""" |
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if data_dest is None: |
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data_dest = join(get_data_cache(), 'sipakmed_raw') |
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if os.path.exists(data_dest): |
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raise ValueError('Data already downloaded.') |
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os.mkdir(data_dest) |
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file_urls = [ |
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'http://cs.uoi.gr/~marina/SIPAKMED/im_Metaplastic.7z', |
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'http://cs.uoi.gr/~marina/SIPAKMED/im_Dyskeratotic.7z' |
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'http://cs.uoi.gr/~marina/SIPAKMED/im_Koilocytotic.7z', |
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'http://cs.uoi.gr/~marina/SIPAKMED/im_Parabasal.7z', |
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'http://cs.uoi.gr/~marina/SIPAKMED/im_Superficial-Intermediate.7z', |
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] |
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cell_types = [ |
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'metaplastic', |
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'dyskeratotic', |
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'koilocytotic' |
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'parabasal', |
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'superficial-Intermediate', |
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] |
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print(f'Downloading SIPaKMed to: {data_dest}') |
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for url, cell_type in zip(file_urls, cell_types): |
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print(f'Downloading {cell_type}...') |
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file_name = f'{cell_type}.zip' |
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urllib.request.urlretrieve(url, join(data_dest, file_name)) |
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for file_name in data_dest: |
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print(f'Extracting {file_name}...') |
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with zipfile.ZipFile(file_urls) as f: |
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f.extract(file_name, dir) |
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os.remove(file_name) |
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print('Finished downloading.') |
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def download_smear(data_dest=None): |
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""" Download the Hervel smear dataset |
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Args: |
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data_dest (str): The path of dir to store data. If noe will default to package cache |
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Returns: |
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None |
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""" |
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raise NotImplementedError('Get it yourself, not implemented.') |
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def get_data_cache(): |
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""" Get the cache where datasets are stored. Defaults to ~/.mediaug |
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Args: |
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None |
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Returns: |
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path (str): The path to the data cache on the system |
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""" |
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p = Path(join(Path.home(), '.mediaug')) |
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p.mkdir(exist_ok=True) |
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return str(p) |