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+MediAug Documentation
+=====================
+
+Overview
+^^^^^^^^
+
+MediAug is a set of tools for data augmentation of histology
+slides. It is primaraly developed for cervical cancer by
+augmenting Pap smear slides. However, it can be extended to
+any cell data that has an image and mask of different types of
+cells. Currently supports general image augmentation techniques
+as well as specialized ones like cell insertion and blending.
+
+Installation
+^^^^^^^^^^^^
+
+To install:
+
+.. code-block:: bash
+
+   $ git clone https://github.com/smwade/MediAug
+   $ python setup.py install
+
+CLI
+^^^^^^^^^^^^
+
+MediAug comes with a CLI with useful scripts. These include:
+
+* generate-augment-dataset
+* prepare-pix2pix-images
+* resize-images
+
+The list of all can be seen with the command
+
+.. code-block:: bash
+
+    $ mediaug --help
+
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Full Documentation:
+
+   source/mediaug
+
+Jupyter Notebooks
+^^^^^^^^^^^^^^^^^
+
+As a brief intro to the package there are several jupyter notbooks. These go over
+things like loading the data, using augmentation operations, and creating a processing
+pipeline.
+
+Indices and tables
+******************
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`