--- a +++ b/R/Proteomics_comparison.R @@ -0,0 +1,11 @@ +require(data.table) +d <- fread("/Users/ftaj/Downloads/primary-screen-replicate-collapsed-logfold-change.csv") +p <- fread("/Users/ftaj/Downloads/Table_S1_Sample_Information.csv") +c <- fread("/Users/ftaj/Downloads/sample_info-2.csv") + +c <- c[, c("DepMap_ID", "CCLE_Name")] +cp <- merge(c, p, by.x = "CCLE_Name", by.y = "CCLE Code") +p + +sum(cp$DepMap_ID %in% d$V1)/375 +colnames(d) \ No newline at end of file