a | b/R/Proteomics_comparison.R | ||
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1 | require(data.table) |
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2 | d <- fread("/Users/ftaj/Downloads/primary-screen-replicate-collapsed-logfold-change.csv") |
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3 | p <- fread("/Users/ftaj/Downloads/Table_S1_Sample_Information.csv") |
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4 | c <- fread("/Users/ftaj/Downloads/sample_info-2.csv") |
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5 | |||
6 | c <- c[, c("DepMap_ID", "CCLE_Name")] |
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7 | cp <- merge(c, p, by.x = "CCLE_Name", by.y = "CCLE Code") |
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8 | p |
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9 | |||
10 | sum(cp$DepMap_ID %in% d$V1)/375 |
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11 | colnames(d) |