--- a
+++ b/man/permutation_thres.Rd
@@ -0,0 +1,26 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/helper_function.R
+\name{permutation_thres}
+\alias{permutation_thres}
+\title{Calculate the positive and negative thresholds based on the permutation result}
+\usage{
+permutation_thres(thres_left, thres_right, p, diff_p)
+}
+\arguments{
+\item{thres_left}{This is the threshold representing 2.5 percent of the left tail of the 
+empirical distributuion curve.}
+
+\item{thres_right}{This is the threshold representing 2.5 percent of the right tail of the 
+empirical distributuion curve.}
+
+\item{p}{This is the number of biomarker candidates.}
+
+\item{diff_p}{This is the permutation result from either permutation_cor or permutation_pc.}
+}
+\value{
+A list of positive and negative thresholds.
+}
+\description{
+This function calculates the positive and negative thresholds based on the 
+    permutation result.
+}