[381c22]: / man / customConvertFeats.Rd

Download this file

29 lines (27 with data), 1.0 kB

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/customConverters.R
\name{customConvertFeats}
\alias{customConvertFeats}
\title{Automatic Feature Id Conversion.}
\usage{
customConvertFeats(x, verbose = TRUE)
}
\arguments{
\item{x}{data.frame or matrix including raw counts (typically, UMIs),
where rows are features (genes) and rownames are feature identifiers
(SYMBOLs or ENTREZIDs).}
\item{verbose}{logical, shall messages be printed to inform about
conversion advances.}
}
\value{
a data.frame where rownames are ENSEMBL IDs. The new feature IDs are
automatically imputed based on existing feature IDs (SYMBOLs or ENTREZIDs).
}
\description{
Attempt to automatically convert non-ENSEMBL feature identifiers to
ENSEMBL identifiers. Features are included as rownames of the input
data.frame (or matrix). It is assumed that feature identifiers
(i.e., rownames of x) come from human or mouse genomes, and
are either OFFICIAL SYMBOLS or ENTREZIDS. If less than 20% of match
is identified, an error will be thrown.
}