% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/DIscBIO-generic-pseudoTimeOrdering.R

\name{pseudoTimeOrdering}

\alias{pseudoTimeOrdering}

\alias{pseudoTimeOrdering,DISCBIO-method}

\title{Pseudo-time ordering}

\usage{

pseudoTimeOrdering(

  object,

  quiet = FALSE,

  export = FALSE,

  filename = "Cellular_pseudo-time_ordering"

)

\S4method{pseudoTimeOrdering}{DISCBIO}(

  object,

  quiet = FALSE,

  export = FALSE,

  filename = "Cellular_pseudo-time_ordering"

)

}

\arguments{

\item{object}{\code{DISCBIO} class object.}

\item{quiet}{if `TRUE`, suppresses intermediary output}

\item{export}{if `TRUE`, exports order table to csv}

\item{filename}{Name of the exported file (if `export=TRUE`)}

}

\value{

The DISCBIO-class object input with the kordering slot filled.

}

\description{

This function takes the exact output of exprmclust function and

  construct Pseudo-time ordering by mapping all cells onto the path that

  connects cluster centers.

}