--- a +++ b/man/customConvertFeats.Rd @@ -0,0 +1,28 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/customConverters.R +\name{customConvertFeats} +\alias{customConvertFeats} +\title{Automatic Feature Id Conversion.} +\usage{ +customConvertFeats(x, verbose = TRUE) +} +\arguments{ +\item{x}{data.frame or matrix including raw counts (typically, UMIs), +where rows are features (genes) and rownames are feature identifiers +(SYMBOLs or ENTREZIDs).} + +\item{verbose}{logical, shall messages be printed to inform about +conversion advances.} +} +\value{ +a data.frame where rownames are ENSEMBL IDs. The new feature IDs are +automatically imputed based on existing feature IDs (SYMBOLs or ENTREZIDs). +} +\description{ +Attempt to automatically convert non-ENSEMBL feature identifiers to +ENSEMBL identifiers. Features are included as rownames of the input +data.frame (or matrix). It is assumed that feature identifiers +(i.e., rownames of x) come from human or mouse genomes, and +are either OFFICIAL SYMBOLS or ENTREZIDS. If less than 20% of match +is identified, an error will be thrown. +}