--- a
+++ b/man/clustheatmap.Rd
@@ -0,0 +1,50 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/DIscBIO-generic-clustheatmap.R
+\name{clustheatmap}
+\alias{clustheatmap}
+\alias{clustheatmap,DISCBIO-method}
+\title{Plotting clusters in a heatmap representation of the cell distances}
+\usage{
+clustheatmap(
+  object,
+  clustering_method = "k-means",
+  hmethod = "single",
+  rseed = NULL,
+  quiet = FALSE,
+  plot = TRUE
+)
+
+\S4method{clustheatmap}{DISCBIO}(
+  object,
+  clustering_method = "k-means",
+  hmethod = "single",
+  rseed = NULL,
+  quiet = FALSE,
+  plot = TRUE
+)
+}
+\arguments{
+\item{object}{\code{DISCBIO} class object.}
+
+\item{clustering_method}{either "k-means" or "model-based" ("k" and "mb" are
+also accepted)}
+
+\item{hmethod}{Agglomeration method used for determining the cluster order
+from hierarchical clustering of the cluster medoids. This should be one of
+"ward.D", "ward.D2", "single", "complete", "average". Default is "single".}
+
+\item{rseed}{Random integer to fix random results.}
+
+\item{quiet}{if `TRUE`, intermediary output is suppressed}
+
+\item{plot}{if `TRUE`, plots the heatmap; otherwise, just prints cclmo}
+}
+\value{
+Unless otherwise specified, a heatmap and a vector of the underlying
+  cluster order.
+}
+\description{
+This functions plots a heatmap of the distance matrix grouped
+  by clusters. Individual clusters are highlighted with rainbow colors along
+  the x and y-axes.
+}