% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/PlotMBpca.R

\name{PlotMBpca}

\alias{PlotMBpca}

\title{Plotting pseudo-time ordering or gene expression in Model-based

clustering in PCA}

\usage{

PlotMBpca(object, type = "order", g = NULL, n = NULL)

}

\arguments{

\item{object}{\code{DISCBIO} class object.}

\item{type}{either `order` to plot pseudo-time ordering or `exp` to plot gene

expression}

\item{g}{Individual gene name or vector with a group of gene names

corresponding to a subset of valid row names of the \code{ndata} slot of

the \code{DISCBIO} object. Ignored if `type="order"`.}

\item{n}{String of characters representing the title of the plot. Default is

NULL and the first element of \code{g} is chosen. Ignored if

`type="order"`.}

}

\value{

A plot of the PCA.

}

\description{

The PCA representation can either be used to show pseudo-time

ordering or the gene expression of a particular gene.

}