% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/DIscBIO-generic-clusteringOrder.R

\name{KmeanOrder}

\alias{KmeanOrder}

\alias{KmeanOrder,DISCBIO-method}

\title{Pseudo-time ordering based on k-means clusters}

\usage{

KmeanOrder(

  object,

  quiet = FALSE,

  export = FALSE,

  filename = "Cellular_pseudo-time_ordering_based_on_k-meansc-lusters"

)

\S4method{KmeanOrder}{DISCBIO}(

  object,

  quiet = FALSE,

  export = FALSE,

  filename = "Cellular_pseudo-time_ordering_based_on_k-meansc-lusters"

)

}

\arguments{

\item{object}{\code{DISCBIO} class object.}

\item{quiet}{if `TRUE`, suppresses intermediary output}

\item{export}{if `TRUE`, exports order table to csv}

\item{filename}{Name of the exported file (if `export=TRUE`)}

}

\value{

The DISCBIO-class object input with the kordering slot filled.

}

\description{

This function takes the exact output of exprmclust function and

  construct Pseudo-time ordering by mapping all cells onto the path that

  connects cluster centers.

}

\note{

This function has been replaced by pseudoTimeOrdering(), but it is

  being kept for legacy purposes. It will, however, be removed from future

  versions of DIscBIO.

}