--- a +++ b/man/Jaccard.Rd @@ -0,0 +1,29 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/Jaccard.R +\name{Jaccard} +\alias{Jaccard} +\title{Jaccard’s similarity} +\usage{ +Jaccard(object, Clustering = "K-means", K, plot = TRUE, R = 100) +} +\arguments{ +\item{object}{\code{DISCBIO} class object.} + +\item{Clustering}{Clustering has to be one of the following: +["K-means","MB"]. Default is "K-means"} + +\item{K}{A numeric value of the number of clusters} + +\item{plot}{if `TRUE`, plots the mean Jaccard similarities} + +\item{R}{number of bootstrap replicates} +} +\value{ +A plot of the mean Jaccard similarity coefficient per cluster. +} +\description{ +Robustness of the clusters can be assessed by Jaccard’s + similarity, which reflects the reproducibility of individual clusters + across bootstrapping runs. Jaccard’s similarity is the intersect of two + clusters divided by the union. +}