#!/usr/bin/env Rscript

mran = "https://mran.microsoft.com/snapshot/2020-09-13"

# install dependencies

# copied from README, only those not available through conda

# most dependencies expressed in environment.yml

install.packages(

    c(

        "philentropy",

        "NetIndices"

    ),

    repos=mran

)

# no bioconductor packages are missing,

# but use this if any are added

# requireNamespace("BiocManager")

# BiocManager::install(...)

BiocManager::install(

    c(

        "impute"

    )

)

# install DIscBIO itself

# remotes::install_github("ocbe-uio/DIscBIO", "dev", repos=mran, build_vignettes=F)

devtools::install_local(getwd(), repos=mran)