--- a
+++ b/config-short.conf
@@ -0,0 +1,42 @@
+#wd=working_directory
+project=myProject
+doClassification=false
+classificationClassName=class
+doRegression=false
+regressionClassName=class
+trainFile=trainFile1.csv, description
+trainFile=trainFile2.csv
+#mergingID=identifier
+sampling=true
+samplingFold=3
+#testSamplingFile=testFile1.csv
+#excluded=columnA,columnB
+numberOfBestModels=1
+numberOfBestModelsSortingMetric=AVG_MCC
+numberOfBestModelsSortingMetricThreshold=0.6
+combineModels=false
+combinationRule=AVG
+debug=false
+printFailedModels=false
+cpus=max
+coptimizers=AUC, MCC, FDR, BER, ACC
+roptimizers=CC, RMSE 
+maxNumberOfSelectedFeatures = 1000
+maxNumberOfFeaturesInModel = 250
+bootstrapFolds=100
+spearmanCorrelation_lower = -0.99
+spearmanCorrelation_upper = 0.99
+pearsonCorrelation_lower = -0.99
+pearsonCorrelation_upper = 0.99
+maxRankingScoreDifference = 0.005
+retreiveCorrelatedGenesByRankingScore=false
+classificationFastWay=false
+ccmd=bayes.NaiveBayes -K, SEN
+ccmd=bayes.NaiveBayes -K, AUC
+ccmd=misc.VFI -B 0.4, SEN
+ccmd=misc.VFI -B 0.4, AUC
+ccmd=misc.VFI -B 0.6
+ccmd=trees.J48
+regressionFastWay=false
+rcmd=functions.GaussianProcesses -L 1.0 -N 1 -K "weka.classifiers.functions.supportVector.PolyKernel -C 250007 -E 1.0", CC
+rcmd=functions.GaussianProcesses -L 1.0 -N 1 -K "weka.classifiers.functions.supportVector.PolyKernel -C 250007 -E 1.0", RMSE