|
a |
|
b/config-short.conf |
|
|
1 |
#wd=working_directory |
|
|
2 |
project=myProject |
|
|
3 |
doClassification=false |
|
|
4 |
classificationClassName=class |
|
|
5 |
doRegression=false |
|
|
6 |
regressionClassName=class |
|
|
7 |
trainFile=trainFile1.csv, description |
|
|
8 |
trainFile=trainFile2.csv |
|
|
9 |
#mergingID=identifier |
|
|
10 |
sampling=true |
|
|
11 |
samplingFold=3 |
|
|
12 |
#testSamplingFile=testFile1.csv |
|
|
13 |
#excluded=columnA,columnB |
|
|
14 |
numberOfBestModels=1 |
|
|
15 |
numberOfBestModelsSortingMetric=AVG_MCC |
|
|
16 |
numberOfBestModelsSortingMetricThreshold=0.6 |
|
|
17 |
combineModels=false |
|
|
18 |
combinationRule=AVG |
|
|
19 |
debug=false |
|
|
20 |
printFailedModels=false |
|
|
21 |
cpus=max |
|
|
22 |
coptimizers=AUC, MCC, FDR, BER, ACC |
|
|
23 |
roptimizers=CC, RMSE |
|
|
24 |
maxNumberOfSelectedFeatures = 1000 |
|
|
25 |
maxNumberOfFeaturesInModel = 250 |
|
|
26 |
bootstrapFolds=100 |
|
|
27 |
spearmanCorrelation_lower = -0.99 |
|
|
28 |
spearmanCorrelation_upper = 0.99 |
|
|
29 |
pearsonCorrelation_lower = -0.99 |
|
|
30 |
pearsonCorrelation_upper = 0.99 |
|
|
31 |
maxRankingScoreDifference = 0.005 |
|
|
32 |
retreiveCorrelatedGenesByRankingScore=false |
|
|
33 |
classificationFastWay=false |
|
|
34 |
ccmd=bayes.NaiveBayes -K, SEN |
|
|
35 |
ccmd=bayes.NaiveBayes -K, AUC |
|
|
36 |
ccmd=misc.VFI -B 0.4, SEN |
|
|
37 |
ccmd=misc.VFI -B 0.4, AUC |
|
|
38 |
ccmd=misc.VFI -B 0.6 |
|
|
39 |
ccmd=trees.J48 |
|
|
40 |
regressionFastWay=false |
|
|
41 |
rcmd=functions.GaussianProcesses -L 1.0 -N 1 -K "weka.classifiers.functions.supportVector.PolyKernel -C 250007 -E 1.0", CC |
|
|
42 |
rcmd=functions.GaussianProcesses -L 1.0 -N 1 -K "weka.classifiers.functions.supportVector.PolyKernel -C 250007 -E 1.0", RMSE |