import torch
from torch import nn
from torch.nn import functional as F
from torch_scatter import scatter_add, scatter_mean
from torchdrug import data
class DiffPool(nn.Module):
"""
Differentiable pooling operator from `Hierarchical Graph Representation Learning with Differentiable Pooling`_
.. _Hierarchical Graph Representation Learning with Differentiable Pooling:
https://papers.nips.cc/paper/7729-hierarchical-graph-representation-learning-with-differentiable-pooling.pdf
Parameter
input_dim (int): input dimension
output_node (int): number of nodes after pooling
feature_layer (Module, optional): graph convolution layer for embedding
pool_layer (Module, optional): graph convolution layer for pooling assignment
loss_weight (float, optional): weight of entropy regularization
zero_diagonal (bool, optional): remove self loops in the pooled graph or not
sparse (bool, optional): use sparse assignment or not
"""
tau = 1
eps = 1e-10
def __init__(self, input_dim, output_node, feature_layer=None, pool_layer=None, loss_weight=1, zero_diagonal=False,
sparse=False):
super(DiffPool, self).__init__()
self.input_dim = input_dim
self.output_dim = feature_layer.output_dim
self.output_node = output_node
self.feature_layer = feature_layer
self.pool_layer = pool_layer
self.loss_weight = loss_weight
self.zero_diagonal = zero_diagonal
self.sparse = sparse
if pool_layer is not None:
self.linear = nn.Linear(pool_layer.output_dim, output_node)
else:
self.linear = nn.Linear(input_dim, output_node)
def forward(self, graph, input, all_loss=None, metric=None):
"""
Compute the node cluster assignment and pool the nodes.
Parameters:
graph (Graph): graph(s)
input (Tensor): input node representations
all_loss (Tensor, optional): if specified, add loss to this tensor
metric (dict, optional): if specified, output metrics to this dict
Returns:
(PackedGraph, Tensor, Tensor):
pooled graph, output node representations, node-to-cluster assignment
"""
feature = input
if self.feature_layer:
feature = self.feature_layer(graph, feature)
x = input
if self.pool_layer:
x = self.pool_layer(graph, x)
x = self.linear(x)
if self.sparse:
assignment = F.gumbel_softmax(x, hard=True, tau=self.tau, dim=-1)
new_graph, output = self.sparse_pool(graph, feature, assignment)
else:
assignment = F.softmax(x, dim=-1)
new_graph, output = self.dense_pool(graph, feature, assignment)
if all_loss is not None:
prob = scatter_mean(assignment, graph.node2graph, dim=0, dim_size=graph.batch_size)
entropy = -(prob * (prob + self.eps).log()).sum(dim=-1)
entropy = entropy.mean()
metric["assignment entropy"] = entropy
if self.loss_weight > 0:
all_loss -= entropy * self.loss_weight
if self.zero_diagonal:
edge_list = new_graph.edge_list[:, :2]
is_diagonal = edge_list[:, 0] == edge_list[:, 1]
new_graph = new_graph.edge_mask(~is_diagonal)
return new_graph, output, assignment
def dense_pool(self, graph, input, assignment):
node_in, node_out = graph.edge_list.t()[:2]
# S^T A S, O(|V|k^2 + |E|k)
x = graph.edge_weight.unsqueeze(-1) * assignment[node_out]
x = scatter_add(x, node_in, dim=0, dim_size=graph.num_node)
x = torch.einsum("np, nq -> npq", assignment, x)
adjacency = scatter_add(x, graph.node2graph, dim=0, dim_size=graph.batch_size)
# S^T X
x = torch.einsum("na, nd -> nad", assignment, input)
output = scatter_add(x, graph.node2graph, dim=0, dim_size=graph.batch_size).flatten(0, 1)
index = torch.arange(self.output_node, device=graph.device).expand(len(graph), self.output_node, -1)
edge_list = torch.stack([index.transpose(-1, -2), index], dim=-1).flatten(0, -2)
edge_weight = adjacency.flatten()
if isinstance(graph, data.PackedGraph):
num_nodes = torch.ones(len(graph), dtype=torch.long, device=input.device) * self.output_node
num_edges = torch.ones(len(graph), dtype=torch.long, device=input.device) * self.output_node ** 2
graph = data.PackedGraph(edge_list, edge_weight=edge_weight, num_nodes=num_nodes, num_edges=num_edges)
else:
graph = data.Graph(edge_list, edge_weight=edge_weight, num_node=self.output_node)
return graph, output
def sparse_pool(self, graph, input, assignment):
assignment = assignment.argmax(dim=-1)
edge_list = graph.edge_list[:, :2]
edge_list = assignment[edge_list]
pooled_node = graph.node2graph * self.output_node + assignment
output = scatter_add(input, pooled_node, dim=0, dim_size=graph.batch_size * self.output_node)
edge_weight = graph.edge_weight
if isinstance(graph, data.PackedGraph):
num_nodes = torch.ones(len(graph), dtype=torch.long, device=input.device) * self.output_node
num_edges = graph.num_edges
graph = data.PackedGraph(edge_list, edge_weight=edge_weight, num_nodes=num_nodes, num_edges=num_edges)
else:
graph = data.Graph(edge_list, edge_weight=edge_weight, num_node=self.output_node)
return graph, output
class MinCutPool(DiffPool):
"""
Min cut pooling operator from `Spectral Clustering with Graph Neural Networks for Graph Pooling`_
.. _Spectral Clustering with Graph Neural Networks for Graph Pooling:
http://proceedings.mlr.press/v119/bianchi20a/bianchi20a.pdf
Parameters:
input_dim (int): input dimension
output_node (int): number of nodes after pooling
feature_layer (Module, optional): graph convolution layer for embedding
pool_layer (Module, optional): graph convolution layer for pooling assignment
loss_weight (float, optional): weight of entropy regularization
zero_diagonal (bool, optional): remove self loops in the pooled graph or not
sparse (bool, optional): use sparse assignment or not
"""
eps = 1e-10
def __init__(self, input_dim, output_node, feature_layer=None, pool_layer=None, loss_weight=1, zero_diagonal=True,
sparse=False):
super(MinCutPool, self).__init__(input_dim, output_node, feature_layer, pool_layer, loss_weight, zero_diagonal,
sparse)
def forward(self, graph, input, all_loss=None, metric=None):
"""
Compute the node cluster assignment and pool the nodes.
Parameters:
graph (Graph): graph(s)
input (Tensor): input node representations
all_loss (Tensor, optional): if specified, add loss to this tensor
metric (dict, optional): if specified, output metrics to this dict
Returns:
(PackedGraph, Tensor, Tensor):
pooled graph, output node representations, node-to-cluster assignment
"""
feature = input
if self.feature_layer:
feature = self.feature_layer(graph, feature)
x = input
if self.pool_layer:
x = self.pool_layer(graph, x)
x = self.linear(x)
if self.sparse:
assignment = F.gumbel_softmax(x, hard=True, tau=self.tau, dim=-1)
new_graph, output = self.sparse_pool(graph, feature, assignment)
else:
assignment = F.softmax(x, dim=-1)
new_graph, output = self.dense_pool(graph, feature, assignment)
if all_loss is not None:
edge_list = new_graph.edge_list
is_diagonal = edge_list[:, 0] == edge_list[:, 1]
num_intra = scatter_add(new_graph.edge_weight[is_diagonal], new_graph.edge2graph[is_diagonal],
dim=0, dim_size=new_graph.batch_size)
x = torch.einsum("na, n, nc -> nac", assignment, graph.degree_in, assignment)
x = scatter_add(x, graph.node2graph, dim=0, dim_size=graph.batch_size)
num_all = torch.einsum("baa -> b", x)
cut_loss = (1 - num_intra / (num_all + self.eps)).mean()
metric["normalized cut loss"] = cut_loss
x = torch.einsum("na, nc -> nac", assignment, assignment)
x = scatter_add(x, graph.node2graph, dim=0, dim_size=graph.batch_size)
x = x / x.flatten(-2).norm(dim=-1, keepdim=True).unsqueeze(-1)
x = x - torch.eye(self.output_node, device=x.device) / (self.output_node ** 0.5)
regularization = x.flatten(-2).norm(dim=-1).mean()
metric["orthogonal regularization"] = regularization
if self.loss_weight > 0:
all_loss += (cut_loss + regularization) * self.loss_weight
if self.zero_diagonal:
edge_list = new_graph.edge_list[:, :2]
is_diagonal = edge_list[:, 0] == edge_list[:, 1]
new_graph = new_graph.edge_mask(~is_diagonal)
return new_graph, output, assignment
Datasets
Models
