|
a |
|
b/tests/test_selfies_utils.py |
|
|
1 |
import pytest |
|
|
2 |
|
|
|
3 |
import selfies as sf |
|
|
4 |
|
|
|
5 |
|
|
|
6 |
class Entry: |
|
|
7 |
|
|
|
8 |
def __init__(self, selfies, symbols, label, one_hot): |
|
|
9 |
self.selfies = selfies |
|
|
10 |
self.symbols = symbols |
|
|
11 |
self.label = label |
|
|
12 |
self.one_hot = one_hot |
|
|
13 |
|
|
|
14 |
|
|
|
15 |
@pytest.fixture() |
|
|
16 |
def dataset(): |
|
|
17 |
stoi = {"[nop]": 0, "[O]": 1, ".": 2, "[C]": 3, "[F]": 4} |
|
|
18 |
itos = {i: c for c, i in stoi.items()} |
|
|
19 |
pad_to_len = 4 |
|
|
20 |
|
|
|
21 |
entries = [ |
|
|
22 |
Entry(selfies="", |
|
|
23 |
symbols=[], |
|
|
24 |
label=[0, 0, 0, 0], |
|
|
25 |
one_hot=[[1, 0, 0, 0, 0], |
|
|
26 |
[1, 0, 0, 0, 0], |
|
|
27 |
[1, 0, 0, 0, 0], |
|
|
28 |
[1, 0, 0, 0, 0]]), |
|
|
29 |
Entry(selfies="[C][C][C]", |
|
|
30 |
symbols=["[C]", "[C]", "[C]"], |
|
|
31 |
label=[3, 3, 3, 0], |
|
|
32 |
one_hot=[[0, 0, 0, 1, 0], |
|
|
33 |
[0, 0, 0, 1, 0], |
|
|
34 |
[0, 0, 0, 1, 0], |
|
|
35 |
[1, 0, 0, 0, 0]]), |
|
|
36 |
Entry(selfies="[C].[C]", |
|
|
37 |
symbols=["[C]", ".", "[C]"], |
|
|
38 |
label=[3, 2, 3, 0], |
|
|
39 |
one_hot=[[0, 0, 0, 1, 0], |
|
|
40 |
[0, 0, 1, 0, 0], |
|
|
41 |
[0, 0, 0, 1, 0], |
|
|
42 |
[1, 0, 0, 0, 0]]), |
|
|
43 |
Entry(selfies="[C][O][C][F]", |
|
|
44 |
symbols=["[C]", "[O]", "[C]", "[F]"], |
|
|
45 |
label=[3, 1, 3, 4], |
|
|
46 |
one_hot=[[0, 0, 0, 1, 0], |
|
|
47 |
[0, 1, 0, 0, 0], |
|
|
48 |
[0, 0, 0, 1, 0], |
|
|
49 |
[0, 0, 0, 0, 1]]), |
|
|
50 |
Entry(selfies="[C][O][C]", |
|
|
51 |
symbols=["[C]", "[O]", "[C]"], |
|
|
52 |
label=[3, 1, 3, 0], |
|
|
53 |
one_hot=[[0, 0, 0, 1, 0], |
|
|
54 |
[0, 1, 0, 0, 0], |
|
|
55 |
[0, 0, 0, 1, 0], |
|
|
56 |
[1, 0, 0, 0, 0]]) |
|
|
57 |
] |
|
|
58 |
|
|
|
59 |
return entries, (stoi, itos, pad_to_len) |
|
|
60 |
|
|
|
61 |
|
|
|
62 |
@pytest.fixture() |
|
|
63 |
def dataset_flat_hots(dataset): |
|
|
64 |
flat_hots = [] |
|
|
65 |
for entry in dataset[0]: |
|
|
66 |
hot = [elm for vec in entry.one_hot for elm in vec] |
|
|
67 |
flat_hots.append(hot) |
|
|
68 |
return flat_hots |
|
|
69 |
|
|
|
70 |
|
|
|
71 |
def test_len_selfies(dataset): |
|
|
72 |
for entry in dataset[0]: |
|
|
73 |
assert sf.len_selfies(entry.selfies) == len(entry.symbols) |
|
|
74 |
|
|
|
75 |
|
|
|
76 |
def test_split_selfies(dataset): |
|
|
77 |
for entry in dataset[0]: |
|
|
78 |
assert list(sf.split_selfies(entry.selfies)) == entry.symbols |
|
|
79 |
|
|
|
80 |
|
|
|
81 |
def test_get_alphabet_from_selfies(dataset): |
|
|
82 |
entries, (vocab_stoi, _, _) = dataset |
|
|
83 |
|
|
|
84 |
selfies = [entry.selfies for entry in entries] |
|
|
85 |
alphabet = sf.get_alphabet_from_selfies(selfies) |
|
|
86 |
alphabet.add("[nop]") |
|
|
87 |
alphabet.add(".") |
|
|
88 |
|
|
|
89 |
assert alphabet == set(vocab_stoi.keys()) |
|
|
90 |
|
|
|
91 |
|
|
|
92 |
def test_selfies_to_encoding(dataset): |
|
|
93 |
entries, (vocab_stoi, vocab_itos, pad_to_len) = dataset |
|
|
94 |
|
|
|
95 |
for entry in entries: |
|
|
96 |
label, one_hot = sf.selfies_to_encoding( |
|
|
97 |
entry.selfies, vocab_stoi, pad_to_len, "both" |
|
|
98 |
) |
|
|
99 |
|
|
|
100 |
assert label == entry.label |
|
|
101 |
assert one_hot == entry.one_hot |
|
|
102 |
|
|
|
103 |
# recover original selfies |
|
|
104 |
selfies = sf.encoding_to_selfies(label, vocab_itos, "label") |
|
|
105 |
selfies = selfies.replace("[nop]", "") |
|
|
106 |
assert selfies == entry.selfies |
|
|
107 |
|
|
|
108 |
selfies = sf.encoding_to_selfies(one_hot, vocab_itos, "one_hot") |
|
|
109 |
selfies = selfies.replace("[nop]", "") |
|
|
110 |
assert selfies == entry.selfies |
|
|
111 |
|
|
|
112 |
|
|
|
113 |
def test_selfies_to_flat_hot(dataset, dataset_flat_hots): |
|
|
114 |
entries, (vocab_stoi, vocab_itos, pad_to_len) = dataset |
|
|
115 |
|
|
|
116 |
batch = [entry.selfies for entry in entries] |
|
|
117 |
flat_hots = sf.batch_selfies_to_flat_hot(batch, vocab_stoi, pad_to_len) |
|
|
118 |
|
|
|
119 |
assert flat_hots == dataset_flat_hots |
|
|
120 |
|
|
|
121 |
# recover original selfies |
|
|
122 |
recovered = sf.batch_flat_hot_to_selfies(flat_hots, vocab_itos) |
|
|
123 |
assert batch == [s.replace("[nop]", "") for s in recovered] |