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bionemo-framework

Downloads: 1

Commit [b9e282]

Initial commit

Authored by: Amanda-D 2025-04-19

Browse code at this revision

Parent: [0b892d]

Child: [be1279]

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added	sub-packages/bionemo-esm2/README.md
added	sub-packages/bionemo-esm2/VERSION
added	sub-packages/bionemo-esm2/pyproject.toml
added	sub-packages/bionemo-esm2/src/bionemo/esm2/__init__.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/api.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/data/__init__.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/data/datamodule.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/data/dataset.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/README.md
added	sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/__init__.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/special_tokens_map.json
added	sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/tokenizer_config.json
added	sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/vocab.txt
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/__init__.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/convert.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/embedding.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/__init__.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/datamodule.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/dataset.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/loss.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/peft.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/sequence_model.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/token_model.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/model/model.py
added	sub-packages/bionemo-esm2/src/bionemo/esm2/run/__init__.py

sub-packages/bionemo-esm2/README.md Diff Switch to side-by-side view

sub-packages/bionemo-esm2/VERSION Diff Switch to side-by-side view

sub-packages/bionemo-esm2/pyproject.toml Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/init.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/api.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/data/init.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/data/datamodule.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/data/dataset.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/README.md Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/init.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/special_tokens_map.json Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/tokenizer_config.json Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/data/tokenizer/vocab.txt Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/init.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/convert.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/embedding.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/init.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/datamodule.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/dataset.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/loss.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/peft.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/sequence_model.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/finetune/token_model.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/model/model.py Diff Switch to side-by-side view

sub-packages/bionemo-esm2/src/bionemo/esm2/run/init.py Diff Switch to side-by-side view

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