[build-system]

requires = ["setuptools>=64", "wheel"]

build-backend = "setuptools.build_meta"

[project]

name = "bionemo-scdl"

readme = "README.md"

description = "SCDL, a Dataset class for Single Cell data."

authors = [{ name = "BioNeMo Team", email = "bionemofeedback@nvidia.com" }]

requires-python = ">=3.10"

license = { file = "LICENSE" }

dynamic = ["version"]

dependencies = [

    # bionemo sub-packages

    'bionemo-core>=2.2.1',

    # external

    'anndata>=0.11.0',

    'pandas>=2.2.1',

    'pyarrow>=16.0.0',

    'scipy>=1.11.1',

    'pydantic[email]',

]

[project.scripts]

convert_h5ad_to_scdl = "bionemo.scdl.scripts.convert_h5ad_to_scdl:main"

[tool.setuptools.packages.find]

where = ["src"]

include = ["bionemo.*"]

namespaces = true

exclude = ["test*."]

[tool.setuptools.dynamic]

version = { file = "VERSION" }

[tool.uv]

cache-keys = [{ git = true }]