--- a +++ b/.pre-commit-config.yaml @@ -0,0 +1,34 @@ +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v2.3.0 + hooks: + - id: end-of-file-fixer + - id: trailing-whitespace + - id: check-yaml + exclude: "mkdocs.yml" + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.9.10 + hooks: + - id: ruff + # 1. Attempt to automatically fix any lint issues. + args: ["--fix"] + - id: ruff-format + - repo: https://github.com/Yelp/detect-secrets + rev: v1.5.0 + hooks: + - id: detect-secrets + name: detect-secrets (everything but notebooks) + args: ['--baseline', '.secrets.baseline', '--exclude-files', '(.*\.ipynb|.*\.baseline)$', ] + exclude: package.lock.json + - id: detect-secrets + name: detect-secrets (notebooks only) + args: ['--baseline', '.secrets-nb.baseline', '--exclude-files', '^.(?!.*\.ipynb)', '--exclude-lines', '"(hash|id|image/\w+)":.*|<.*at 0x[0-9a-f]+>|object at 0x[0-9a-f]+', ] + - repo: local + hooks: + - id: license-header-check + name: Run license-check script + entry: python internal/infra-bionemo/src/infra_bionemo/license_check.py -c scripts -c sub-packages -c docs -c internal --license-header ./license_header --modify + language: python + additional_dependencies: ["click==8.1.7"] + pass_filenames: false + always_run: true