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a |
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b/environment.yml |
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name: druggen |
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channels: |
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- pytorch |
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- pyg |
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- mcs07 |
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- anaconda |
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- nvidia |
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- conda-forge |
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- defaults |
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dependencies: |
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- _libgcc_mutex=0.1=conda_forge |
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- _openmp_mutex=4.5=2_kmp_llvm |
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- asttokens=2.0.5=pyhd3eb1b0_0 |
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- backcall=0.2.0=pyhd3eb1b0_0 |
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- blas=1.0=mkl |
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- boost=1.74.0=py310h7c3ba0c_5 |
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- boost-cpp=1.74.0=h75c5d50_8 |
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- bottleneck=1.3.5=py310ha9d4c09_0 |
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- brotli=1.0.9=h5eee18b_7 |
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- brotli-bin=1.0.9=h5eee18b_7 |
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- brotlipy=0.7.0=py310h7f8727e_1002 |
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- bzip2=1.0.8=h7b6447c_0 |
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- ca-certificates=2022.10.11=h06a4308_0 |
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- cairo=1.16.0=hb05425b_3 |
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- certifi=2022.12.7=py310h06a4308_0 |
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- cffi=1.15.1=py310h5eee18b_3 |
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- charset-normalizer=2.0.4=pyhd3eb1b0_0 |
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- comm=0.1.2=py310h06a4308_0 |
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29 |
- contourpy=1.0.5=py310hdb19cb5_0 |
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- cryptography=38.0.4=py310h9ce1e76_0 |
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- cuda=11.6.1=0 |
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- cuda-cccl=11.6.55=hf6102b2_0 |
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- cuda-command-line-tools=11.6.2=0 |
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- cuda-compiler=11.6.2=0 |
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- cuda-cudart=11.6.55=he381448_0 |
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- cuda-cudart-dev=11.6.55=h42ad0f4_0 |
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- cuda-cuobjdump=11.6.124=h2eeebcb_0 |
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- cuda-cupti=11.6.124=h86345e5_0 |
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- cuda-cuxxfilt=11.6.124=hecbf4f6_0 |
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- cuda-driver-dev=11.6.55=0 |
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- cuda-gdb=12.0.90=0 |
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- cuda-libraries=11.6.1=0 |
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- cuda-libraries-dev=11.6.1=0 |
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- cuda-memcheck=11.8.86=0 |
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- cuda-nsight=12.0.78=0 |
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- cuda-nsight-compute=12.0.0=0 |
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- cuda-nvcc=11.6.124=hbba6d2d_0 |
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- cuda-nvdisasm=12.0.76=0 |
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- cuda-nvml-dev=11.6.55=haa9ef22_0 |
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- cuda-nvprof=12.0.90=0 |
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- cuda-nvprune=11.6.124=he22ec0a_0 |
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- cuda-nvrtc=11.6.124=h020bade_0 |
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- cuda-nvrtc-dev=11.6.124=h249d397_0 |
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- cuda-nvtx=11.6.124=h0630a44_0 |
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- cuda-nvvp=12.0.90=0 |
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- cuda-runtime=11.6.1=0 |
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- cuda-samples=11.6.101=h8efea70_0 |
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58 |
- cuda-sanitizer-api=12.0.90=0 |
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- cuda-toolkit=11.6.1=0 |
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- cuda-tools=11.6.1=0 |
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- cuda-visual-tools=11.6.1=0 |
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- cycler=0.11.0=pyhd3eb1b0_0 |
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- debugpy=1.5.1=py310h295c915_0 |
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64 |
- decorator=5.1.1=pyhd3eb1b0_0 |
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- entrypoints=0.4=py310h06a4308_0 |
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66 |
- executing=0.8.3=pyhd3eb1b0_0 |
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- expat=2.4.9=h6a678d5_0 |
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68 |
- ffmpeg=4.2.2=h20bf706_0 |
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- fftw=3.3.9=h27cfd23_1 |
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- flit-core=3.6.0=pyhd3eb1b0_0 |
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- fontconfig=2.14.1=h52c9d5c_1 |
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72 |
- fonttools=4.25.0=pyhd3eb1b0_0 |
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- freetype=2.12.1=h4a9f257_0 |
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- gds-tools=1.5.0.59=0 |
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- giflib=5.2.1=h7b6447c_0 |
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- glib=2.69.1=he621ea3_2 |
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- gmp=6.2.1=h295c915_3 |
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78 |
- gnutls=3.6.15=he1e5248_0 |
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- greenlet=2.0.1=py310h6a678d5_0 |
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- icu=70.1=h27087fc_0 |
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81 |
- idna=3.4=py310h06a4308_0 |
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82 |
- intel-openmp=2021.4.0=h06a4308_3561 |
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- ipykernel=6.19.2=py310h2f386ee_0 |
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84 |
- ipython=8.7.0=py310h06a4308_0 |
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85 |
- jedi=0.18.1=py310h06a4308_1 |
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86 |
- jinja2=3.1.2=py310h06a4308_0 |
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- joblib=1.1.1=py310h06a4308_0 |
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88 |
- jpeg=9e=h7f8727e_0 |
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89 |
- jupyter_client=7.4.8=py310h06a4308_0 |
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90 |
- jupyter_core=5.1.1=py310h06a4308_0 |
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91 |
- kiwisolver=1.4.4=py310h6a678d5_0 |
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92 |
- lame=3.100=h7b6447c_0 |
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- lcms2=2.12=h3be6417_0 |
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- ld_impl_linux-64=2.38=h1181459_1 |
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- lerc=3.0=h295c915_0 |
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96 |
- libbrotlicommon=1.0.9=h5eee18b_7 |
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- libbrotlidec=1.0.9=h5eee18b_7 |
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98 |
- libbrotlienc=1.0.9=h5eee18b_7 |
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99 |
- libcublas=11.9.2.110=h5e84587_0 |
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- libcublas-dev=11.9.2.110=h5c901ab_0 |
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- libcufft=10.7.1.112=hf425ae0_0 |
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- libcufft-dev=10.7.1.112=ha5ce4c0_0 |
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- libcufile=1.5.0.59=0 |
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104 |
- libcufile-dev=1.5.0.59=0 |
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105 |
- libcurand=10.3.1.50=0 |
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106 |
- libcurand-dev=10.3.1.50=0 |
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107 |
- libcusolver=11.3.4.124=h33c3c4e_0 |
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108 |
- libcusparse=11.7.2.124=h7538f96_0 |
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109 |
- libcusparse-dev=11.7.2.124=hbbe9722_0 |
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110 |
- libdeflate=1.8=h7f8727e_5 |
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111 |
- libffi=3.4.2=h6a678d5_6 |
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112 |
- libgcc-ng=12.2.0=h65d4601_19 |
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113 |
- libgfortran-ng=11.2.0=h00389a5_1 |
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114 |
- libgfortran5=11.2.0=h1234567_1 |
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115 |
- libiconv=1.16=h7f8727e_2 |
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116 |
- libidn2=2.3.2=h7f8727e_0 |
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117 |
- libnpp=11.6.3.124=hd2722f0_0 |
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118 |
- libnpp-dev=11.6.3.124=h3c42840_0 |
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119 |
- libnvjpeg=11.6.2.124=hd473ad6_0 |
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120 |
- libnvjpeg-dev=11.6.2.124=hb5906b9_0 |
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121 |
- libopus=1.3.1=h7b6447c_0 |
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122 |
- libpng=1.6.37=hbc83047_0 |
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123 |
- libsodium=1.0.18=h7b6447c_0 |
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124 |
- libstdcxx-ng=11.2.0=h1234567_1 |
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125 |
- libtasn1=4.16.0=h27cfd23_0 |
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126 |
- libtiff=4.5.0=hecacb30_0 |
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127 |
- libunistring=0.9.10=h27cfd23_0 |
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128 |
- libuuid=1.41.5=h5eee18b_0 |
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129 |
- libvpx=1.7.0=h439df22_0 |
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130 |
- libwebp=1.2.4=h11a3e52_0 |
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131 |
- libwebp-base=1.2.4=h5eee18b_0 |
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132 |
- libxcb=1.15=h7f8727e_0 |
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133 |
- libxml2=2.9.14=h22db469_4 |
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134 |
- libzlib=1.2.13=h166bdaf_4 |
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135 |
- llvm-openmp=14.0.6=h9e868ea_0 |
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136 |
- lz4-c=1.9.4=h6a678d5_0 |
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137 |
- markupsafe=2.1.1=py310h7f8727e_0 |
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138 |
- matplotlib-base=3.6.2=py310h945d387_0 |
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139 |
- matplotlib-inline=0.1.6=py310h06a4308_0 |
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140 |
- mkl=2021.4.0=h06a4308_640 |
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141 |
- mkl-service=2.4.0=py310h7f8727e_0 |
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142 |
- mkl_fft=1.3.1=py310hd6ae3a3_0 |
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143 |
- mkl_random=1.2.2=py310h00e6091_0 |
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144 |
- munkres=1.1.4=py_0 |
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145 |
- ncurses=6.3=h5eee18b_3 |
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146 |
- nest-asyncio=1.5.6=py310h06a4308_0 |
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147 |
- nettle=3.7.3=hbbd107a_1 |
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148 |
- nsight-compute=2022.4.0.15=0 |
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149 |
- numexpr=2.8.4=py310h8879344_0 |
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150 |
- numpy=1.23.1=py310h1794996_0 |
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151 |
- numpy-base=1.23.1=py310hcba007f_0 |
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152 |
- openh264=2.1.1=h4ff587b_0 |
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153 |
- openssl=1.1.1s=h7f8727e_0 |
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154 |
- packaging=22.0=py310h06a4308_0 |
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155 |
- pandas=1.5.2=py310h1128e8f_0 |
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156 |
- parso=0.8.3=pyhd3eb1b0_0 |
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157 |
- pcre=8.45=h295c915_0 |
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158 |
- pexpect=4.8.0=pyhd3eb1b0_3 |
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159 |
- pickleshare=0.7.5=pyhd3eb1b0_1003 |
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160 |
- pillow=9.3.0=py310hace64e9_1 |
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161 |
- pip=22.3.1=py310h06a4308_0 |
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162 |
- pixman=0.40.0=h7f8727e_1 |
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163 |
- platformdirs=2.5.2=py310h06a4308_0 |
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164 |
- prompt-toolkit=3.0.36=py310h06a4308_0 |
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165 |
- psutil=5.9.0=py310h5eee18b_0 |
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166 |
- ptyprocess=0.7.0=pyhd3eb1b0_2 |
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167 |
- pubchempy=1.0.4=py_3 |
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168 |
- pure_eval=0.2.2=pyhd3eb1b0_0 |
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169 |
- pycairo=1.21.0=py310h287db57_0 |
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170 |
- pycparser=2.21=pyhd3eb1b0_0 |
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171 |
- pyg=2.2.0=py310_torch_1.13.0_cu116 |
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172 |
- pygments=2.11.2=pyhd3eb1b0_0 |
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173 |
- pyopenssl=22.0.0=pyhd3eb1b0_0 |
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174 |
- pyparsing=3.0.9=py310h06a4308_0 |
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175 |
- pysocks=1.7.1=py310h06a4308_0 |
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176 |
- python=3.10.8=h7a1cb2a_1 |
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177 |
- python-dateutil=2.8.2=pyhd3eb1b0_0 |
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178 |
- python_abi=3.10=2_cp310 |
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179 |
- pytorch=1.13.1=py3.10_cuda11.6_cudnn8.3.2_0 |
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180 |
- pytorch-cluster=1.6.0=py310_torch_1.13.0_cu116 |
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181 |
- pytorch-cuda=11.6=h867d48c_1 |
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182 |
- pytorch-mutex=1.0=cuda |
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183 |
- pytorch-scatter=2.1.0=py310_torch_1.13.0_cu116 |
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184 |
- pytorch-sparse=0.6.15=py310_torch_1.13.0_cu116 |
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185 |
- pytz=2022.7=py310h06a4308_0 |
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186 |
- pyzmq=23.2.0=py310h6a678d5_0 |
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187 |
- rdkit=2022.03.2=py310h1c297d8_0 |
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188 |
- readline=8.2=h5eee18b_0 |
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189 |
- reportlab=3.5.67=py310h0edfc0f_1 |
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190 |
- requests=2.28.1=py310h06a4308_0 |
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191 |
- scikit-learn=1.1.3=py310h6a678d5_0 |
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192 |
- scipy=1.9.3=py310hd5efca6_0 |
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193 |
- seaborn=0.12.1=py310h06a4308_0 |
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194 |
- setuptools=65.6.3=py310h06a4308_0 |
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195 |
- six=1.16.0=pyhd3eb1b0_1 |
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196 |
- sqlalchemy=1.4.39=py310h5eee18b_0 |
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197 |
- sqlite=3.40.1=h5082296_0 |
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198 |
- stack_data=0.2.0=pyhd3eb1b0_0 |
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199 |
- threadpoolctl=2.2.0=pyh0d69192_0 |
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200 |
- tk=8.6.12=h1ccaba5_0 |
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201 |
- torchaudio=0.13.1=py310_cu116 |
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202 |
- torchvision=0.14.1=py310_cu116 |
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203 |
- tornado=6.2=py310h5eee18b_0 |
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204 |
- tqdm=4.64.1=py310h06a4308_0 |
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205 |
- traitlets=5.7.1=py310h06a4308_0 |
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206 |
- typing_extensions=4.4.0=py310h06a4308_0 |
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207 |
- tzdata=2022g=h04d1e81_0 |
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208 |
- urllib3=1.26.13=py310h06a4308_0 |
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209 |
- wcwidth=0.2.5=pyhd3eb1b0_0 |
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210 |
- wheel=0.37.1=pyhd3eb1b0_0 |
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211 |
- x264=1!157.20191217=h7b6447c_0 |
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212 |
- xz=5.2.8=h5eee18b_0 |
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213 |
- zeromq=4.3.4=h2531618_0 |
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214 |
- zlib=1.2.13=h166bdaf_4 |
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215 |
- zstd=1.5.2=ha4553b6_0 |
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216 |
- wandb |
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217 |
- pip: |
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218 |
- cairocffi==1.4.0 |
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219 |
- cairosvg==2.6.0 |
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220 |
- cssselect2==0.7.0 |
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221 |
- defusedxml==0.7.1 |
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222 |
- fcd-torch==1.0.7 |
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223 |
- opencv-python==4.7.0.68 |
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224 |
- pyyaml==6.0 |
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225 |
- regex==2022.10.31 |
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226 |
- tinycss2==1.2.1 |
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227 |
- torchview==0.2.2 |
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228 |
- webencodings==0.5.1 |
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229 |
- torchtext==0.6.0 |
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230 |
- chembl_structure_pipeline==1.2.2 |