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+.. doct documentation master file, created by
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+
+DeepPurpose documentation!
+================================================================
+Welcome! This is the documentation for DeepPurpose. 
+DeepPurpose is a Deep Learning Based Drug Repurposing and Virtual Screening Toolkit (using PyTorch). 
+It allows very easy usage (only one line of code!) 
+for non-computational domain researchers to be able to 
+obtain a list of potential drugs using deep learning 
+while facilitating deep learning method research in this topic 
+by providing a flexible framework (less than 10 lines of codes!) and baselines. 
+The Github repository is located `here <https://github.com/kexinhuang12345/DeepPurpose>`_.
+
+
+.. toctree::
+   :glob:
+   :maxdepth: 1
+   :caption: Background 
+
+   notes/introduction
+   notes/DTI 
+
+
+.. toctree::
+   :glob:
+   :maxdepth: 1
+   :caption: How to run
+
+   notes/download 
+   notes/casestudy
+
+
+.. toctree::
+   :glob:
+   :maxdepth: 1
+   :caption: Package Reference
+
+   notes/models
+   notes/dataset
+   notes/chemutils
+   notes/oneliner
+   notes/model_helper
+   notes/utils
+
+
+.. toctree::
+   :glob:
+   :maxdepth: 1
+   :caption: Importance Function
+
+   notes/model
+   notes/encoder
+   notes/process_data
+   notes/configuration
+   notes/utility_function
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