--- a +++ b/DEMO/web_ui_gradio.ipynb @@ -0,0 +1,89 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dataset already downloaded in the local system...\n", + "Running locally at: http://127.0.0.1:7860/\n", + "Running on External URL: https://37678.gradio.app\n" + ] + }, + { + "data": { + "text/html": [ + "\n", + " <iframe\n", + " width=\"1000\"\n", + " height=\"500\"\n", + " src=\"http://127.0.0.1:7860/\"\n", + " frameborder=\"0\"\n", + " allowfullscreen\n", + " ></iframe>\n", + " " + ], + "text/plain": [ + "<IPython.lib.display.IFrame at 0x7fba2f2a2e90>" + ] + }, + "metadata": {}, + "output_type": "display_data" + }, + { + "data": { + "text/plain": [ + "(<gradio.networking.serve_files_in_background.<locals>.HTTPServer at 0x7fba2cc15250>,\n", + " 'http://127.0.0.1:7860/',\n", + " 'https://37678.gradio.app')" + ] + }, + "execution_count": 2, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "import os\n", + "os.chdir('../')\n", + "from DeepPurpose import utils\n", + "from DeepPurpose import DTI as models\n", + "import gradio\n", + "\n", + "model = models.model_pretrained(model = 'MPNN_CNN_BindingDB')\n", + "\n", + "def DTI_pred(drug, target):\n", + " X_pred = utils.data_process(X_drug = [drug], X_target = [target], y = [0],\n", + " drug_encoding = 'MPNN', target_encoding = 'CNN', \n", + " split_method='no_split')\n", + " y_pred = model.predict(X_pred)\n", + " return str(y_pred[0])\n", + "\n", + "gradio.Interface(DTI_pred, \n", + " [gradio.inputs.Textbox(lines = 5, label = \"Drug SMILES\"),\n", + " gradio.inputs.Textbox(lines = 5, label = \"Target Amino Acid Sequence\")], \n", + " gradio.outputs.Textbox(label = \"Predicted Affinity\")).launch(share=True)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python [conda env:DeepPurpose]", + "language": "python", + "name": "conda-env-DeepPurpose-py" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +}