[build-system]
requires = ["setuptools", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "aiagents4pharma-talk2knowledgegraphs"
description = "An agent to interact with biomedical knowledgegraphs"
readme = "README.md"
requires-python = ">=3.12"
classifiers = [
  "Programming Language :: Python :: 3",
  "License :: OSI Approved :: MIT License",
  "Operating System :: OS Independent",
]
dependencies = [
  "coverage==7.6.4",
  "einops==0.8.0",
  "gdown==5.2.0",
  "gravis==0.1.0",
  "huggingface_hub==0.26.5",
  "hydra-core==1.3.2",
  "langchain==0.3.7",
  "langchain-community==0.3.5",
  "langchain-core==0.3.40",
  "langchain-experimental==0.3.3",
  "langchain_ollama==0.2.3",
  "joblib==1.4.2",
  "ollama==0.4.7",
  "pandas==2.2.3",
  "pcst_fast==1.0.10",
  "pubchempy==1.0.4",
  "pydantic==2.9.2",
  "pylint==3.3.1",
  "pypdf==5.2.0",
  "pytest==8.3.3",
  "pytest-asyncio-0.25.2",
  "sentence_transformers==3.3.1",
  "torch==2.2.2",
  "torch_geometric==2.6.1",
  "tqdm==4.66.6",
  "transformers==4.48.0",
  "mkdocs==1.6.1",
  "mkdocs-jupyter==0.25.1",
  "mkdocs-material==9.5.47",
  "mkdocstrings-python==1.12.2",
  "mkdocs-include-markdown-plugin==7.1.2",
  "mkdocstrings==0.27.0",
]
dynamic = ["version"]

[tool.setuptools.dynamic]
version = { file = "release_version.txt" }

# find packages
[tool.setuptools]
packages = [
  "aiagents4pharma",
  "aiagents4pharma.talk2knowledgegraphs",
  "aiagents4pharma.talk2knowledgegraphs.datasets",
  "aiagents4pharma.talk2knowledgegraphs.utils",
  "aiagents4pharma.talk2knowledgegraphs.utils.enrichments",
  "aiagents4pharma.talk2knowledgegraphs.utils.embeddings",
  "aiagents4pharma.talk2knowledgegraphs.utils.extractions",
]