--- a
+++ b/requirements.txt
@@ -0,0 +1,55 @@
+anndata==0.11.3
+copasi_basico==0.78
+coverage==7.6.4
+einops==0.8.0
+gdown==5.2.0
+gravis==0.1.0
+huggingface_hub==0.26.5
+hydra-core==1.3.2
+h5py==3.13.0
+igraph==0.11.8
+ipykernel==6.29.5
+ipython==8.32.0
+joblib==1.4.2
+langchain==0.3.7
+langchain-community==0.3.5
+langchain-core==0.3.40
+langchain-experimental==0.3.3
+langchain-nvidia-ai-endpoints==0.3.9
+langchain-openai==0.3.0
+langchain_ollama==0.2.3
+langgraph_supervisor==0.0.9
+matplotlib==3.9.2
+nbformat==5.10.4
+openai==1.59.4
+ollama==0.4.7
+pandas==2.2.3
+pcst_fast==1.0.10
+plotly==5.24.1
+plotly-express==0.4.1
+pubchempy==1.0.4
+pydantic==2.9.2
+pylint==3.3.1
+pypdf==5.2.0
+pytest==8.3.3
+pytest-asyncio==0.25.2
+pyzotero==1.6.9
+sentence_transformers==3.3.1
+seaborn==0.13.2
+scanpy==1.11.0
+scipy==1.15.2
+streamlit==1.39.0
+tabulate==0.9.0
+torch==2.2.2
+torch_geometric==2.6.1
+tqdm==4.67.1
+transformers==4.48.0
+mkdocs==1.6.1
+mkdocs-jupyter==0.25.1
+mkdocs-material==9.5.47
+mkdocstrings-python==1.12.2
+mkdocs-include-markdown-plugin==7.1.2
+mkdocstrings==0.27.0
+streamlit-feedback
+umap-learn==0.5.7
+PyPDF2==3.0.1