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+### T2B - Frequently Asked Questions (FAQs)
+
+#### 1. How can I find models related to a specific disease or topic?
+<details>
+  <summary>Click to expand</summary>
+  You can use the `Search_models` tool to query the BioModels database for relevant models based on keywords. Here are some examples:
+  <br>
+  - Search for Crohn’s disease models:
+    ```
+    Search models on Crohn’s disease
+    ```
+  - Find models on COVID-19:
+    ```
+    Find models on COVID-19
+    ```
+</details>
+
+#### 2. How can I get details about a specific model?
+<details>
+  <summary>Click to expand</summary>
+  Use the `Get_modelinfo` tool to retrieve information such as species names, parameters, initial values, and descriptions. Examples:
+  <br>
+  - Briefly describe a model:
+    ```
+    Briefly describe model 971
+    ```
+  - List all species and parameters in a model:
+    ```
+    List all the species and parameters in model 971
+    ```
+  - Get the initial concentration of a specific species:
+    ```
+    What is the initial concentration of Pyruvate in model 64?
+    ```
+  - List model name and units in a table format:
+    ```
+    List the name and units in model 537. Show them as a table.
+    ```
+</details>
+
+#### 3. How do I retrieve annotations from a model?
+<details>
+  <summary>Click to expand</summary>
+  The `Get_annotations` tool extracts model annotations and provides descriptions from UniProt and OLS databases where possible.
+  <br>
+  - Show all annotations in a model:
+    ```
+    Show me all the annotations in model 64
+    ```
+  - Retrieve specific annotations related to interleukins:
+    ```
+    Show me annotations of only interleukin-related species in model 537
+    ```
+</details>
+
+#### 4. How do I run a simulation on a model?
+<details>
+  <summary>Click to expand</summary>
+  Use the `Simulate_model` tool to simulate a model. You can specify duration, time intervals, and initial values for species/parameters.
+  <br>
+  - Basic simulation:
+    ```
+    Simulate model 64
+    ```
+  - Specify simulation time and interval:
+    ```
+    Simulate model 64 for 3 days with an interval of 10
+    ```
+  - Set initial concentration and add recurring events:
+    ```
+    Run a simulation on model 537 for 100 hours with a time interval of 50.
+    Set the initial concentration of Ab{serum} to 100.
+    Add a recurring event that resets Ab{serum} to 100 every 20 hours.
+    ```
+</details>
+
+#### 5. Can I create custom plots from my simulation results?
+<details>
+  <summary>Click to expand</summary>
+  The `Custom_plotter` tool helps you focus on a subset of species in a simulation plot.
+  <br>
+  - Plot only CRP-related species:
+    ```
+    Make a custom plot to show only CRP-related species.
+    ```
+  - Plot glucose-related species:
+    ```
+    Plot only glucose-related species.
+    ```
+</details>
+
+#### 6. How do I bring a model to steady state?
+<details>
+  <summary>Click to expand</summary>
+  The `Steady_state` tool helps stabilize a model.
+  <br>
+  - Basic steady-state analysis:
+    ```
+    Bring model 64 to a steady state
+    ```
+  - Set initial conditions before analysis:
+    ```
+    Bring model 64 to a steady state. Set the initial concentration of Pyruvate to 50.
+    ```
+</details>
+
+#### 7. How do I ask questions about the simulation results?
+<details>
+  <summary>Click to expand</summary>
+  Use the `Ask_question` tool after running a simulation or steady-state analysis to retrieve insights.
+  <br>
+  - Steady-state concentration of a species:
+    ```
+    What is the steady-state concentration of Pyruvate?
+    ```
+  - Time required for a species to reach steady state:
+    ```
+    How long does glucose-related species take to reach steady state?
+    ```
+  - Final concentration in a simulation:
+    ```
+    What is the concentration of CRP-related species at the end of the simulation?
+    ```
+</details>
+
+#### 8. How do I analyze how one species or parameter affects another?
+<details>
+  <summary>Click to expand</summary>
+  The `Parameter_scan` tool allows you to analyze how changes in one parameter affect another.
+  <br>
+  - Effect of extracellular glucose on Pyruvate:
+    ```
+    How does the value of Pyruvate change in model 64 if the concentration of Extracellular Glucose is changed from 10 to 100 with a step size of 10? The simulation should run for 5 time units with an interval of 10.
+    ```
+  - Effect of dose changes on CRP concentration:
+    ```
+    Run a param scan in model 537 to observe change in concentration of CRP in serum over time if initial value of the parameter Dose is changed from 100 to 500 with a step size of 25.
+    ```
+</details>
+
+#### 9. Can I ask questions about a research article I uploaded?
+<details>
+  <summary>Click to expand</summary>
+  The `Query_article` tool helps analyze uploaded research articles.
+  <br>
+  - Summarize key takeaways:
+    ```
+    What are the key takeaways of the uploaded article?
+    ```
+  - Find parameter descriptions in the article:
+    ```
+    Query the uploaded article to suggest possible description of the parameter gR in model 64.
+    ```
+</details>
+
+#### 10. How can I compare different simulations or steady-state results?
+<details>
+  <summary>Click to expand</summary>
+  Assign names to different experiments and compare results.
+  <br>
+  - Compare simulations:
+    ```
+    Simulate model 537 for 2016 hours. Call it experiment Treatment4wk.
+    ```
+    ```
+    Redo the simulation for 2016 hours but set the initial value of Dose to 0 and DoseQ2W to 300. Call it experiment Treatment2wk.
+    ```
+    ```
+    What is the concentration of CRP in serum at the end of the simulation in all experiments done so far?
+    ```
+  - Compare steady-state results:
+    ```
+    Bring model 64 to a steady state. Call it Experiment_1.
+    ```
+    ```
+    Bring model 64 to a steady state. Set initial concentration of NADH to 10. Call it Experiment_2.
+    ```
+    ```
+    Compare the concentration of Pyruvate in both experiments at steady state.
+    ```
+</details>
+