[build-system]

requires = ["setuptools", "wheel"]

build-backend = "setuptools.build_meta"

[project]

name = "aiagents4pharma-talk2knowledgegraphs"

description = "An agent to interact with biomedical knowledgegraphs"

readme = "README.md"

requires-python = ">=3.12"

classifiers = [

  "Programming Language :: Python :: 3",

  "License :: OSI Approved :: MIT License",

  "Operating System :: OS Independent",

]

dependencies = [

  "coverage==7.6.4",

  "einops==0.8.0",

  "gdown==5.2.0",

  "gravis==0.1.0",

  "huggingface_hub==0.26.5",

  "hydra-core==1.3.2",

  "langchain==0.3.7",

  "langchain-community==0.3.5",

  "langchain-core==0.3.40",

  "langchain-experimental==0.3.3",

  "langchain_ollama==0.2.3",

  "joblib==1.4.2",

  "ollama==0.4.7",

  "pandas==2.2.3",

  "pcst_fast==1.0.10",

  "pubchempy==1.0.4",

  "pydantic==2.9.2",

  "pylint==3.3.1",

  "pypdf==5.2.0",

  "pytest==8.3.3",

  "pytest-asyncio-0.25.2",

  "sentence_transformers==3.3.1",

  "torch==2.2.2",

  "torch_geometric==2.6.1",

  "tqdm==4.66.6",

  "transformers==4.48.0",

  "mkdocs==1.6.1",

  "mkdocs-jupyter==0.25.1",

  "mkdocs-material==9.5.47",

  "mkdocstrings-python==1.12.2",

  "mkdocs-include-markdown-plugin==7.1.2",

  "mkdocstrings==0.27.0",

]

dynamic = ["version"]

[tool.setuptools.dynamic]

version = { file = "release_version.txt" }

# find packages

[tool.setuptools]

packages = [

  "aiagents4pharma",

  "aiagents4pharma.talk2knowledgegraphs",

  "aiagents4pharma.talk2knowledgegraphs.datasets",

  "aiagents4pharma.talk2knowledgegraphs.utils",

  "aiagents4pharma.talk2knowledgegraphs.utils.enrichments",

  "aiagents4pharma.talk2knowledgegraphs.utils.embeddings",

  "aiagents4pharma.talk2knowledgegraphs.utils.extractions",

]