[build-system]

requires = ["setuptools", "wheel"]

build-backend = "setuptools.build_meta"

[project]

name = "AIAgents4Pharma"

description = "The main agent to interact with the other agents of AIAgents4Pharma"

readme = "README.md"

requires-python = ">=3.12"

classifiers = [

  "Programming Language :: Python :: 3",

  "License :: OSI Approved :: MIT License",

  "Operating System :: OS Independent",

]

dependencies = [

  "copasi_basico==0.78",

  "coverage==7.6.4",

  "einops==0.8.0",

  "gdown==5.2.0",

  "gravis==0.1.0",

  "huggingface_hub==0.26.5",

  "hydra-core==1.3.2",

  "joblib==1.4.2",

  "langchain==0.3.7",

  "langchain-community==0.3.5",

  "langchain-core==0.3.40",

  "langchain-experimental==0.3.3",

  "langchain-nvidia-ai-endpoints==0.3.9",

  "langchain-openai==0.2.5",

  "langchain_ollama==0.2.3",

  "langgraph_supervisor==0.0.4",

  "matplotlib==3.9.2",

  "openai==1.59.4",

  "ollama==0.4.7",

  "pandas==2.2.3",

  "pcst_fast==1.0.10",

  "plotly==5.24.1",

  "pubchempy==1.0.4",

  "pydantic==2.9.2",

  "pylint==3.3.1",

  "pypdf==5.2.0",

  "pytest==8.3.3",

  "pytest-asyncio==0.25.2",

  "pyzotero==1.6.9",

  "streamlit==1.39.0",

  "sentence_transformers==3.3.1",

  "tabulate==0.9.0",

  "torch==2.2.2",

  "torch_geometric==2.6.1",

  "tqdm==4.66.6",

  "transformers==4.48.0",

  "mkdocs==1.6.1",

  "mkdocs-jupyter==0.25.1",

  "mkdocs-material==9.5.47",

  "mkdocstrings-python==1.12.2",

  "mkdocs-include-markdown-plugin==7.1.2",

  "mkdocstrings==0.27.0",

  "streamlit-feedback",

  "anndata==0.11.3",

  "h5py==3.13.0",

  "igraph==0.11.8",

  "ipykernel==6.29.5",

  "ipython==8.32.0",

  "numpy==2.1.3",

  "nbformat==5.10.4",

  "scipy==1.15.2",

  "tqdm==4.67.1",

  "umap-learn==0.5.7",

  "plotly-express==0.4.1",

  "seaborn==0.13.2",

  "scanpy==1.11.0",

]

dynamic = ["version"]

# Package discovery for the submodule

[tool.setuptools]

packages = [

  "talk2aiagents4pharma",

  "talk2aiagents4pharma.configs",

  "talk2aiagents4pharma.agents",

  "talk2aiagents4pharma.states",

]