# Jasmin Straube, Queensland Facility of Advanced Bioinformatics

#

# NOTE to myself: Kidney have been integrated to timeOmics after lmms removal from CRAN

# to remove WARNINGS, hidden variable ".Random.seed" have been removed and data have been re-saved.

# Raw data are still available: https://github.com/cran/lmms/blob/master/data/kidneySimTimeGroup.RData

#' Kidney Simulation Data

#' 

#' This data set contains the simulated expression of 140 proteins in 40 samples

#' from either group 1 or group 2 measured on the time points 0, 0.5, 1, 2, 3, 4. 

#' 

#' @usage 

#' data(kidneySimTimeGroup)

#' 

#' @description 

#' A list containing the following components:

#' @format

#' \describe{

#'    \item{\code{data}}{data matrix with 192 rows and 140 columns. Each row represents 

#'        an experimental sample, and each column a single protein.}

#'    \item{\code{time}}{a numeric vector containing the time points on which each sample is measured}

#'    \item{\code{sampleID}}{a character vector containing the biological replicate information of each sample }

#'    \item{\code{group}}{a character vector indicating the group of each sample}

#'    }

#'

#' @details

#'    This simulated data set consists of 40 samples and 140 proteins and was based on an

#'    the existing study from Freue \emph{et al.} (2010). Samples were measured on maximum 6 time points: 0, 0.5, 1, 2, 3, 4. Some samples have missing time points. 50 molecules were randomly selected to introduce a fold change of log(2). 

#'

#'

#' @source

#'    The Kidney Simulation Data is based  on the the paper of Freue \emph{et al.} (2010).

#'

#'

#' @references 

#'    Freue, G. V. C. et al. (2010). Proteomic signatures in plasma during early acute renal allograft rejection. \emph{Molecular & cellular proteomics}, \bold{9}, 1954-67.

#'

#'

#' @keywords 

#' datasets

"kidneySimTimeGroup"