--- a +++ b/NEWS.md @@ -0,0 +1,41 @@ +Changes in version 0.99.1 (2020-04-03) ++ Submitted to Bioconductor + +Changes in version 1.1.2 (2020-06-03) ++ fix `left_join` issue + +Changes in version 1.1.3 (2020-06-26) ++ fix `tuneCluster.spls` columns drop + +Changes in version 1.1.4 (2020-08-19) ++ add block renaming option in `plotLong` + +Changes in version 1.1.5 - 1.1.8 (2020-10-15) ++ fix `lmms` removed from CRAN ++ temporary fix before including `lmmSpline()` in timeOmics + +Changes in version 1.3.1 (2020-12-08) ++ fix factor level in silhouette (change to R 4.1) + +Changes in version 1.3.2 (2021-04-12) ++ add filters to `getCluster()` + +Changes in version 1.3.4 (2021-04-13) ++ add *UpDown clustering* (based on the sign of variation between 2 timepoints) + +Changes in version 1.5.2 (2021-08-09) ++ update vignette + +Changes in version 1.7.1 (2021-10-06) ++ Add title parameter to `plot.ncomp.tune.silhouette()` + +Changes in version 1.7.2 (2022-03-01) ++ Update citation info ++ fix bug with `tuneCluster.spca()`: empty choice.keepX returned when no features selected on the component (pos or neg). + Now, if any feature is selected in pos or neg, the function returns the minimum value. + +Changes in version 1.9.1 (2022-10-04) ++ fix is() multiple tested classes replaced by class(...); bioc 3.16 + +Changes in version 1.11.1 (2023-03-16) ++ Remove `propr` dependencies (removed from CRAN)