--- a +++ b/DESCRIPTION @@ -0,0 +1,41 @@ +Package: timeOmics +Title: Time-Course Multi-Omics data integration +Version: 1.15.11 +Authors@R: + c(person("Antoine","Bodein", role = c("aut", "cre"), email = "antoine.bodein.1@ulaval.ca"), + person("Olivier", "Chapleur", role = c("aut")), + person("Kim-Anh", "Le Cao", role = c("aut")), + person("Arnaud", "Droit", role = c("aut"))) +Description: timeOmics is a generic data-driven framework to integrate + multi-Omics longitudinal data measured on the same biological samples and select + key temporal features with strong associations within the same sample group. + The main steps of timeOmics are: + 1. Plaform and time-specific normalization and filtering steps; + 2. Modelling each biological into one time expression profile; + 3. Clustering features with the same expression profile over time; + 4. Post-hoc validation step. +License: GPL-3 +Encoding: UTF-8 +LazyData: true +Imports: + dplyr, + tidyr, + tibble, + purrr, + magrittr, + ggplot2, + stringr, + ggrepel, + lmtest, + plyr, + checkmate +biocViews: Clustering,FeatureExtraction,TimeCourse,DimensionReduction,Software, + Sequencing, Microarray, Metabolomics, Metagenomics, Proteomics, + Classification, Regression, ImmunoOncology, GenePrediction, + MultipleComparison +Depends: mixOmics, R (>= 4.0) +RoxygenNote: 7.3.1 +VignetteBuilder: knitr +Suggests: BiocStyle, knitr, rmarkdown, testthat, snow, tidyverse, igraph, gplots +Remotes: cran/lmms +BugReports: https://github.com/abodein/timeOmics/issues