a b/script/run_LRP_script.sh 

  1
  
# Run DE analysis (LRP) based on the well-trained scMDC model and its results.





  
  

  2
  
f=../datasets/CITESeq_GSE128639_BMNC_annodata.h5





  
  

  3
  
python -u run_scMDC.py --n_clusters 27 --ae_weight_file ./out_bmnc_full/AE_weights_bmnc.pth.tar --data_file $f --prediction_file bmnc --save_dir out_bmnc_full --filter1





  
  

  4
  
python -u run_LRP.py --n_clusters 27 --ae_weights ./out_bmnc_full/AE_weights_bmnc.pth.tar --cluster_index_file ./out_bmnc_full/1_pred.csv --data_file $f --save_dir out_bmnc_full --filter1