--- a +++ b/datasets/readme.md @@ -0,0 +1,17 @@ +# Example Real datasets +Example datasets are in h5 format and can be downloaded from https://drive.google.com/drive/folders/1HTCrb3HZpbN8Nte5xGhY517NMdyzqftw?usp=sharing + +Required objects in h5 file for running scMDC +1) X1: mRNA count matrix +2) X2: ADT count matrix +3) Y: True labels (if exist) +4) Batch: batch indicator (for multi-batch analysis) + +Other objects in the h5 files: +1) ADT: feature names in ADT count matirx (only in CITE-seq data) +2) GenesFromPeaks: feature names in the gene-to-cell matrix mapped from scATAC-seq (only in SMAGE-seq data) +3) Genes: feature names in mRNA count matrix +4) Cell types: cell type of each cell (if exist). +5) Barcodes: cell barcodes (if exits) + +Note: for using filtered datasets (Normalized_filtred*), use X1_ and X2_ as inputs.