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Package: scAI
Type: Package
Title: integrative analysis of single-cell transcriptomic and epigenomic profiles 
Version: 1.0.0
Author: Suoqin Jin, Lihua Zhang
Maintainer: Suoqin Jin <suoqin.jin@uci.edu>, Lihua Zhang <lihuaz1@uci.edu>
Description: an unsupervised method for integrative analysis of parallel single-cell transcriptomic and epigenomic profiles.
Depends: R (>= 3.5.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports:
    Rcpp,
    RcppEigen,
    rfunctions,
    doParallel,
    foreach,
    reticulate,
    future,
    future.apply,
    pbapply,
    irlba,
    ggplot2,
    Matrix,
    expm,
    Rtsne,
    NNLM,
    swne,
    dplyr,
    ggrepel, 
    circlize,
    igraph,
    ComplexHeatmap,
    RColorBrewer,
    cowplot,
    methods,
    bedr,
    biomaRt
Remotes: jaredhuling/rfunctions,linxihui/NNLM,yanwu2014/swne,jokergoo/ComplexHeatmap
LinkingTo: Rcpp, RcppEigen
Suggests:
    rmarkdown, knitr, roxygen2
RoxygenNote: 6.1.1
VignetteBuilder: knitr