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b/man/selectFeatures.Rd |
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% Generated by roxygen2: do not edit by hand |
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% Please edit documentation in R/scAI_model.R |
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\name{selectFeatures} |
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\alias{selectFeatures} |
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\title{select highly variable features} |
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\usage{ |
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selectFeatures(object, assay = "RNA", do.plot = TRUE, do.text = TRUE, |
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x.low.cutoff = 0.01, x.high.cutoff = 3.5, y.cutoff = 0.5, |
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y.high.cutoff = Inf, num.bin = 20, pch.use = 16, |
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col.use = "black", cex.text.use = 0.5) |
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} |
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\arguments{ |
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\item{object}{scAI objecy} |
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\item{assay}{Name of assay} |
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\item{do.plot}{Whether showing plot} |
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\item{do.text}{Whether adding feature names} |
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\item{x.low.cutoff}{The minimum expression level} |
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\item{x.high.cutoff}{The maximum expression level} |
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\item{y.cutoff}{The minimum fano factor values} |
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\item{y.high.cutoff}{The maximum fano factor values} |
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\item{num.bin}{Number of bins} |
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\item{pch.use}{Shape of dots in ggplot} |
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\item{col.use}{Color of dots} |
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\item{cex.text.use}{Size of text} |
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} |
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\description{ |
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select highly variable features |
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} |