% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/scAI_model.R

\name{run_scAI}

\alias{run_scAI}

\title{run scAI model}

\usage{

run_scAI(

  object,

  K,

  do.fast = FALSE,

  nrun = 5L,

  hvg.use1 = FALSE,

  hvg.use2 = FALSE,

  keep_all = F,

  s = 0.25,

  alpha = 1,

  lambda = 1e+05,

  gamma = 1,

  maxIter = 500L,

  stop_rule = 1L,

  init = NULL,

  rand.seed = 1L

)

}

\arguments{

\item{object}{scAI object}

\item{K}{An integer indicating the Rank of the inferred factor}

\item{do.fast}{whether use the python version for running scAI optimization model}

\item{nrun}{Number of times to repreat the running}

\item{hvg.use1}{whether use high variable genes for RNA-seq data}

\item{hvg.use2}{whether use high variable genes for ATAC-seq data}

\item{keep_all}{Whether keep all the results from multiple runs}

\item{s}{Probability of Bernoulli distribution}

\item{alpha}{model parameter}

\item{lambda}{model parameter}

\item{gamma}{model parameter}

\item{maxIter}{An integer indicating Maximum number of iteration}

\item{stop_rule}{Stop rule to be used}

\item{init}{List of the initialized low-rank matrices}

\item{rand.seed}{An integer indicating the seed}

}

\value{

}

\description{

run scAI model

}