--- a
+++ b/man/run_scAI.Rd
@@ -0,0 +1,61 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/scAI_model.R
+\name{run_scAI}
+\alias{run_scAI}
+\title{run scAI model}
+\usage{
+run_scAI(
+  object,
+  K,
+  do.fast = FALSE,
+  nrun = 5L,
+  hvg.use1 = FALSE,
+  hvg.use2 = FALSE,
+  keep_all = F,
+  s = 0.25,
+  alpha = 1,
+  lambda = 1e+05,
+  gamma = 1,
+  maxIter = 500L,
+  stop_rule = 1L,
+  init = NULL,
+  rand.seed = 1L
+)
+}
+\arguments{
+\item{object}{scAI object}
+
+\item{K}{An integer indicating the Rank of the inferred factor}
+
+\item{do.fast}{whether use the python version for running scAI optimization model}
+
+\item{nrun}{Number of times to repreat the running}
+
+\item{hvg.use1}{whether use high variable genes for RNA-seq data}
+
+\item{hvg.use2}{whether use high variable genes for ATAC-seq data}
+
+\item{keep_all}{Whether keep all the results from multiple runs}
+
+\item{s}{Probability of Bernoulli distribution}
+
+\item{alpha}{model parameter}
+
+\item{lambda}{model parameter}
+
+\item{gamma}{model parameter}
+
+\item{maxIter}{An integer indicating Maximum number of iteration}
+
+\item{stop_rule}{Stop rule to be used}
+
+\item{init}{List of the initialized low-rank matrices}
+
+\item{rand.seed}{An integer indicating the seed}
+}
+\value{
+
+}
+\description{
+run scAI model
+}