--- a
+++ b/man/preprocessing.Rd
@@ -0,0 +1,30 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/scAI_model.R
+\name{preprocessing}
+\alias{preprocessing}
+\title{preprocess the raw.data including quality control and normalization}
+\usage{
+preprocessing(object, assay = list("RNA", "ATAC"), minFeatures = 200,
+  minCells = 3, minCounts = NULL, maxCounts = NULL,
+  libararyflag = TRUE, logNormalize = TRUE)
+}
+\arguments{
+\item{object}{scAI object}
+
+\item{assay}{List of assay names to be normalized}
+
+\item{minFeatures}{Filter out cells with expressed features < minimum features}
+
+\item{minCells}{Filter out features expressing in less than minCells}
+
+\item{minCounts}{Filter out cells with expressed count < minCounts}
+
+\item{maxCounts}{Filter out cells with expressed count > minCounts}
+
+\item{libararyflag}{Whether do library size normalization}
+
+\item{logNormalize}{whether do log transformation}
+}
+\description{
+preprocess the raw.data including quality control and normalization
+}