--- a
+++ b/man/lmHeatmap.Rd
@@ -0,0 +1,22 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/scAI_plotting.R
+\name{lmHeatmap}
+\alias{lmHeatmap}
+\title{Visualize the inferred biologically relevant factors
+We plot the heatmap of the three learned low-rank matrices using hierarchical clustering.}
+\usage{
+lmHeatmap(object, color.by, colors.use = NULL, do.sampling = T)
+}
+\arguments{
+\item{object}{scAI object}
+
+\item{color.by}{the name of the variable in object.pData; defining cell groups (not necessary)}
+
+\item{colors.use}{defined colors of the cell groups}
+
+\item{do.sampling}{whether perform sampling of loci when generating heatmap of the loci-factor matrix}
+}
+\description{
+Visualize the inferred biologically relevant factors
+We plot the heatmap of the three learned low-rank matrices using hierarchical clustering.
+}