% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/scAI_plotting.R

\name{lmHeatmap}

\alias{lmHeatmap}

\title{Visualize the inferred biologically relevant factors

We plot the heatmap of the three learned low-rank matrices using hierarchical clustering.}

\usage{

lmHeatmap(object, color.by, colors.use = NULL, do.sampling = T)

}

\arguments{

\item{object}{scAI object}

\item{color.by}{the name of the variable in object.pData; defining cell groups (not necessary)}

\item{colors.use}{defined colors of the cell groups}

\item{do.sampling}{whether perform sampling of loci when generating heatmap of the loci-factor matrix}

}

\description{

Visualize the inferred biologically relevant factors

We plot the heatmap of the three learned low-rank matrices using hierarchical clustering.

}