--- a
+++ b/man/identifyFactorMarkers.Rd
@@ -0,0 +1,32 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/scAI_model.R
+\name{identifyFactorMarkers}
+\alias{identifyFactorMarkers}
+\title{Identify enriched features in each factor}
+\usage{
+identifyFactorMarkers(object, assay, features = NULL, cutoff.W = 0.5,
+  cutoff.H = 0.5, thresh.pc = 0.05, thresh.fc = 0.25,
+  thresh.p = 0.05, n.top = 10)
+}
+\arguments{
+\item{object}{scAI object}
+
+\item{assay}{Name of assay to be analyzed}
+
+\item{features}{a vector of features}
+
+\item{cutoff.W}{Threshold of feature loading values}
+
+\item{cutoff.H}{Threshold of cell loading values}
+
+\item{thresh.pc}{Threshold of the percent of cells enriched in one factor}
+
+\item{thresh.fc}{Threshold of Fold Change}
+
+\item{thresh.p}{Threshold of p-values}
+
+\item{n.top}{Number of top features to be returned}
+}
+\description{
+Rank features in each factor by Factor loading analysis
+}